Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C06
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    27   3.6  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   4.7  
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609...    26   6.2  
07_01_0088 + 684471-685154,685271-685834,685938-686222                 26   6.2  
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731...    26   6.2  
06_03_0752 - 24171847-24174321                                         26   8.3  
02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353     26   8.3  
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696...    26   8.3  

>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 149 TMNPWRLFINLFRMKLKNSCYARSLKPTPPKRKHRQN 39
           TM  W++FI  F +   + C+ + +K +     H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 176 PSPALCPAGTMNPWRLFINLFRMKLKNSCY----ARSLKPTPPKR 54
           P+ A+  A    P+RLF    R   K S      AR LKP+PP R
Sbjct: 3   PAVAVVAAAAAFPFRLFSAEARRNTKGSRSKRGSARPLKPSPPPR 47


>07_01_1104 -
           10160493-10160599,10160632-10160637,10160930-10160975,
           10161053-10161190,10161275-10161679,10163193-10163330,
           10163401-10163482,10163596-10163943,10164294-10164655,
           10165154-10165209,10166428-10166558,10166564-10166628,
           10169191-10169631
          Length = 774

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 124 INRRQGFIVPAGHSAGDGSPFSTPAGCESELGFGHYEASQNKE*NREFVHFWL 282
           +N   G++ P  +SAGD     TP    ++   G   ASQ+   N +   FWL
Sbjct: 167 LNLDYGYVYPMFYSAGDLLATGTPKVHVNQKNTGSVNASQDIL-NLDETGFWL 218


>07_01_0088 + 684471-685154,685271-685834,685938-686222
          Length = 510

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 186 KRAAIAGTVSCRNDESLASIYKLIQNEAEKLLLCQK 79
           KR  I  T+S R+D+ + +    + ++++ + LC K
Sbjct: 435 KREMIVSTISRRDDDDMETFRDRVDDDSDHVRLCLK 470


>02_05_1303 +
           35572403-35572624,35572744-35572860,35572987-35573112,
           35573217-35573279,35573837-35573944,35574587-35574664,
           35574772-35574864,35575206-35575292,35575429-35575530,
           35575617-35575736,35575839-35575901,35575974-35576119,
           35576203-35576296,35576399-35576457,35576568-35576607,
           35576694-35576785,35576877-35576946,35578172-35578333,
           35578477-35578703,35578863-35579070,35579173-35579258,
           35579450-35579541,35579674-35579870
          Length = 883

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 269 TNSRFYSLFWLAS*WPKPNSLSHP 198
           T+SR   LFW AS W K     HP
Sbjct: 846 TSSRSSDLFWAASSWLKQLRAYHP 869


>06_03_0752 - 24171847-24174321
          Length = 824

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 188 PPQLDVKVSWASAI 229
           PP +D K+SWA A+
Sbjct: 691 PPHMDTKMSWAEAV 704


>02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353
          Length = 135

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 247 CFGLLHNGRSPTHFHIQLGWK 185
           CF  L    SPT+ H QL WK
Sbjct: 57  CFQPLKIPASPTNIHYQLRWK 77


>01_06_0357 -
           28668894-28669238,28669510-28669537,28669578-28669635,
           28669836-28669916,28670395-28670526,28670609-28670926,
           28672495-28673317
          Length = 594

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 112 LNKFINRRQGFIVPAGHSAGDG 177
           L+K    R GFIVP GH   +G
Sbjct: 244 LHKKNGIRNGFIVPIGHGGSEG 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,149,398
Number of Sequences: 37544
Number of extensions: 192043
Number of successful extensions: 559
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)