Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C06
         (330 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065199-1|AAH65199.1|  453|Homo sapiens family with sequence si...    28   6.0  
BC037572-1|AAH37572.1|  453|Homo sapiens family with sequence si...    28   6.0  
AF123073-1|AAK01477.1|  453|Homo sapiens C/EBP-induced protein p...    28   6.0  
BC075809-1|AAH75809.1|  549|Homo sapiens TBC1 domain family, mem...    28   8.0  
BC071680-1|AAH71680.1|  549|Homo sapiens TBC1 domain family, mem...    28   8.0  
AF540953-1|AAN33117.1|  549|Homo sapiens Rab GTPase-activating p...    28   8.0  

>BC065199-1|AAH65199.1|  453|Homo sapiens family with sequence
           similarity 117, member A protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 221 KPNSLSHPAGVEKGLPSPALCPAGTMNPWRLFI 123
           K +S  HPA +E G PSP L  A +  P   +I
Sbjct: 303 KASSPGHPAFLEDGSPSPVLAFAASPRPNHSYI 335


>BC037572-1|AAH37572.1|  453|Homo sapiens family with sequence
           similarity 117, member A protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 221 KPNSLSHPAGVEKGLPSPALCPAGTMNPWRLFI 123
           K +S  HPA +E G PSP L  A +  P   +I
Sbjct: 303 KASSPGHPAFLEDGSPSPVLAFAASPRPNHSYI 335


>AF123073-1|AAK01477.1|  453|Homo sapiens C/EBP-induced protein
           protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 221 KPNSLSHPAGVEKGLPSPALCPAGTMNPWRLFI 123
           K +S  HPA +E G PSP L  A +  P   +I
Sbjct: 303 KASSPGHPAFLEDGSPSPVLAFAASPRPNHSYI 335


>BC075809-1|AAH75809.1|  549|Homo sapiens TBC1 domain family, member
           3G protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 206 SHPAGVEKGLPSPALCPAGTMNPWR 132
           ++P G + G+PSPAL   G    WR
Sbjct: 425 TYPVGTQ-GVPSPALAQGGPQGSWR 448


>BC071680-1|AAH71680.1|  549|Homo sapiens TBC1 domain family, member
           3C protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 206 SHPAGVEKGLPSPALCPAGTMNPWR 132
           ++P G + G+PSPAL   G    WR
Sbjct: 425 TYPVGTQ-GVPSPALAQGGPQGSWR 448


>AF540953-1|AAN33117.1|  549|Homo sapiens Rab GTPase-activating
           protein PRC17 protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 206 SHPAGVEKGLPSPALCPAGTMNPWR 132
           ++P G + G+PSPAL   G    WR
Sbjct: 425 TYPVGTQ-GVPSPALAQGGPQGSWR 448


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,075,567
Number of Sequences: 237096
Number of extensions: 1114278
Number of successful extensions: 2338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2338
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)