Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C06
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.14 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   1.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   2.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   6.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   6.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   8.9  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.14
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 161 CPAGTMNPWRL-FINLFRMKLKNSCYARSLK 72
           CP GT NP  L  +N F++ L+NS   R +K
Sbjct: 91  CPKGTKNPGTLATVNAFKL-LRNSMGKRRVK 120


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 100 KTPAMPEALSRHHRNGNTDKMPF 32
           KT A+P  L+RH+R  +T + P+
Sbjct: 99  KTFAVPARLTRHYRT-HTGEKPY 120


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 175 GSPFSTPAGCESELGFGHYEAS 240
           GS   TP     EL  GHY++S
Sbjct: 752 GSIVGTPVHMAPELLSGHYDSS 773


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 175 GSPFSTPAGCESELGFGHYEAS 240
           GS   TP     EL  GHY++S
Sbjct: 790 GSIVGTPVHMAPELLSGHYDSS 811


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 71   PTPPKRKHRQN 39
            P PP R H QN
Sbjct: 1860 PPPPPRNHDQN 1870


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 76  LSRHHRNGNTDKM 38
           L+ HHRN +T +M
Sbjct: 316 LNYHHRNADTHEM 328


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 122 NLFRMKLKNSCYARS 78
           N++++ LKN  Y RS
Sbjct: 674 NMYKLDLKNMKYTRS 688


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 218 PNSLSHPAGVEKGLPSPALCPAGTMNP 138
           P  LS P G  +G P   L    + NP
Sbjct: 622 PARLSLPKGQPQGFPLQFLVVISSSNP 648


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 180 AAIAGTVSCRNDESLA 133
           AA AG  SCR   SLA
Sbjct: 140 AATAGDKSCRYTASLA 155



 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 94  PAMPEALSRHHRNGNT 47
           P +   L  HH+NG T
Sbjct: 165 PMVNYTLGHHHQNGAT 180


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 232 HNGRSPTHFHIQLGW 188
           H+G+S +H H    W
Sbjct: 397 HSGQSSSHHHGSKSW 411


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +2

Query: 17  YNIMIKRHF 43
           YNI+++RH+
Sbjct: 235 YNILLRRHY 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,861
Number of Sequences: 438
Number of extensions: 1845
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)