Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C04
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    31   0.21 
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   5.9  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   7.8  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 516 QASTSTPEEKEEKPDVPTLMQQMRDTGLIMKPGALP-LTAAKVEDNDSTNLTEHD 355
           +A TS   +K  K ++   +++ R T   ++  A+  L  AK E  DSTNLT  +
Sbjct: 436 EACTSRESQKTRKKNLKENIRKQRTTSTAIRDIAIKFLDDAKCETEDSTNLTNRE 490


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 522 ALQASTSTPEEKEEKPDVPTLMQQMRDTGLIM 427
           +L  ++S P ++ E+ D P+L  Q+RD   ++
Sbjct: 103 SLLKNSSEPLDRTERKDFPSLAMQIRDANSLV 134


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = -2

Query: 567 DKECTMYT-LSMSEARALQASTSTPEEKEEK----PDVPTLMQQMRDT 439
           +K  T  T +S  +   +  +TS+P ++EEK    P+ P+++ Q ++T
Sbjct: 370 EKPVTSATEVSSEKVEKVDGNTSSPSKEEEKPSTEPEKPSVVTQRKET 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,723
Number of Sequences: 5004
Number of extensions: 35753
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)