Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C04
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    45   5e-05
09_06_0211 + 21601321-21601807,21601982-21602265,21603337-21603666     30   1.5  
01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412     29   2.6  
02_05_0866 - 32331629-32334328                                         28   6.0  
02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862     28   6.0  

>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 17/36 (47%), Positives = 26/36 (72%)
 Frame = -2

Query: 642 RDQPFGILVRNVRCIKCHKWGHINTDKECTMYTLSM 535
           R +PFG+ VRNVRC++C  +GH + D+EC +  + M
Sbjct: 194 RVKPFGVEVRNVRCLRCGNYGHQSGDRECPLKDVIM 229


>09_06_0211 + 21601321-21601807,21601982-21602265,21603337-21603666
          Length = 366

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 540 SMSEARALQASTSTPEEKEE---KPDVPTLMQQMRDTGLIMKPGALP 409
           S  EAR L A    PEE+EE   +P+ P    +   T  +M P  LP
Sbjct: 71  SAEEARCLWAKLPAPEEEEEAGQQPERPPSSYRRPPTSTLMAPVGLP 117


>01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412
          Length = 255

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 609 VRCIKCHKWGHINTDKECTMYTLSMSEARALQASTSTPEEKEEKPDVPTL 460
           V+C +C +WGHI+  +EC     ++ E     A TS+ +   +  D+ T+
Sbjct: 93  VQCFRCDEWGHIS--RECP----TLKEKAKANAVTSSNDSDSDGCDLLTM 136


>02_05_0866 - 32331629-32334328
          Length = 899

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 138 GFIQAIIKKSAKQND*NILLTFFCPSNLCVWRVN 239
           G  QA++   A Q D   L     PS  CVW  N
Sbjct: 54  GAFQAVVYNPAGQQDRYYLAVVHAPSKTCVWVAN 87


>02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862
          Length = 220

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 215 RRTEEC*QYISVILLSTFLNNCLNEANFFLCQ*FF**PLI 96
           R+  EC  + SV  L+ FL+N L   N+F C  FF  P++
Sbjct: 83  RQLVECAMFASVAGLAYFLSNSLAIENYFSC--FFPLPIV 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,716,932
Number of Sequences: 37544
Number of extensions: 199523
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)