Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_C04
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 88 6e-18
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 88 6e-18
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 33 0.19
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 33 0.19
Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical pr... 30 1.8
U29537-6|AAO38648.1| 340|Caenorhabditis elegans Egg laying defe... 28 7.2
U29537-4|AAO38647.1| 450|Caenorhabditis elegans Egg laying defe... 28 7.2
U29537-2|AAK31508.1| 465|Caenorhabditis elegans Egg laying defe... 28 7.2
AF283982-1|AAG13397.1| 471|Caenorhabditis elegans transcription... 28 7.2
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 87.8 bits (208), Expect = 6e-18
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = -2
Query: 687 YXAPRESYCKGDNEIRDQPFGILVRNVRCIKCHKWGHINTDKECTMY 547
Y APRE + KG+ EI+DQPFGI VRNVRC KCHKWGHINTD+EC ++
Sbjct: 96 YQAPREDWAKGNEEIQDQPFGIQVRNVRCCKCHKWGHINTDRECPLF 142
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 87.8 bits (208), Expect = 6e-18
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = -2
Query: 687 YXAPRESYCKGDNEIRDQPFGILVRNVRCIKCHKWGHINTDKECTMY 547
Y APRE + KG+ EI+DQPFGI VRNVRC KCHKWGHINTD+EC ++
Sbjct: 96 YQAPREDWAKGNEEIQDQPFGIQVRNVRCCKCHKWGHINTDRECPLF 142
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
W04A8.7 protein.
Length = 1792
Score = 33.1 bits (72), Expect = 0.19
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 618 VRNVRCIKCHKWGHINTDKECTMY 547
++ +RC CH +GH+ T++ C +Y
Sbjct: 1263 LQKMRCSACHAYGHMKTNRNCPLY 1286
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 33.1 bits (72), Expect = 0.19
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 618 VRNVRCIKCHKWGHINTDKECTMY 547
++ +RC CH +GH+ T++ C +Y
Sbjct: 1263 LQKMRCSACHAYGHMKTNRNCPLY 1286
>Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical
protein R08D7.6c protein.
Length = 856
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 481 KTRCTNSHATDA*HGPHHETGSTASDCC*G 392
+T C NS D H HHE S S CC G
Sbjct: 18 QTNCQNSQRGDGLHHHHHEAAS-GSTCCGG 46
>Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical
protein R08D7.6b protein.
Length = 734
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 481 KTRCTNSHATDA*HGPHHETGSTASDCC*G 392
+T C NS D H HHE S S CC G
Sbjct: 18 QTNCQNSQRGDGLHHHHHEAAS-GSTCCGG 46
>Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical
protein R08D7.6a protein.
Length = 859
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 481 KTRCTNSHATDA*HGPHHETGSTASDCC*G 392
+T C NS D H HHE S S CC G
Sbjct: 18 QTNCQNSQRGDGLHHHHHEAAS-GSTCCGG 46
>U29537-6|AAO38648.1| 340|Caenorhabditis elegans Egg laying
defective protein 44,isoform d protein.
Length = 340
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 534 SEARALQASTSTPEEKEEKPDVPTLMQQMRDTGLIMKPGAL---PLTAA 397
S + L E+ ++K D+P+L+QQ G + P A+ P++AA
Sbjct: 27 SHIQVLARKKLRDEQAKKKGDIPSLLQQASPPGGVKSPSAVVFPPVSAA 75
>U29537-4|AAO38647.1| 450|Caenorhabditis elegans Egg laying
defective protein 44,isoform c protein.
Length = 450
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 534 SEARALQASTSTPEEKEEKPDVPTLMQQMRDTGLIMKPGAL---PLTAA 397
S + L E+ ++K D+P+L+QQ G + P A+ P++AA
Sbjct: 137 SHIQVLARKKLRDEQAKKKGDIPSLLQQASPPGGVKSPSAVVFPPVSAA 185
>U29537-2|AAK31508.1| 465|Caenorhabditis elegans Egg laying
defective protein 44,isoform a protein.
Length = 465
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 534 SEARALQASTSTPEEKEEKPDVPTLMQQMRDTGLIMKPGAL---PLTAA 397
S + L E+ ++K D+P+L+QQ G + P A+ P++AA
Sbjct: 152 SHIQVLARKKLRDEQAKKKGDIPSLLQQASPPGGVKSPSAVVFPPVSAA 200
>AF283982-1|AAG13397.1| 471|Caenorhabditis elegans transcription
enhancer factor-1-like protein EGL-44 protein.
Length = 471
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 534 SEARALQASTSTPEEKEEKPDVPTLMQQMRDTGLIMKPGAL---PLTAA 397
S + L E+ ++K D+P+L+QQ G + P A+ P++AA
Sbjct: 137 SHIQVLARKKLRDEQAKKKGDIPSLLQQASPPGGVKSPSAVVFPPVSAA 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,701,110
Number of Sequences: 27780
Number of extensions: 199890
Number of successful extensions: 639
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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