Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C03
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    90   3e-19
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    43   4e-05
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.9  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 46/102 (45%), Positives = 58/102 (56%)
 Frame = -2

Query: 701 GFVLCXLGNLSIHILLKNLRPPGTKIRRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFT 522
           G+    L N   HI+L++LRP G+K R IP   G       N VS PNY +E   WLFF 
Sbjct: 193 GWAFAVLSNFRTHIILRDLRPAGSKKRVIPTGYG------FNLVSFPNYFFESLGWLFFA 246

Query: 521 IMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKGRK 396
           ++TK   + +F   G  QM VWA  KH  Y KEFP+YP+ RK
Sbjct: 247 LLTKSWASWIFLFVGSAQMFVWAKKKHARYLKEFPNYPRSRK 288


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
 Frame = -2

Query: 716 YIGLGGFVLCXLGNLSIHILLKNLRPPGTKIRRIPKPDGN---------PFSLLLNFVSC 564
           YIG+  +++  LGN+    +L +LR    K +     D           P+  L  +VSC
Sbjct: 158 YIGMFLWLMGWLGNMYHDNILYDLRRSSNKKKDPDNLDTVQSENSYYRIPYGGLFQYVSC 217

Query: 563 PNYTYEFGSWL--FFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKGRKA 393
           PNY  E+  W   +        P   F  +    M   A+  H+ Y K+FP YP  R+A
Sbjct: 218 PNYFCEWIEWFGCYLAAGPSAEPFWWFFLSEILLMLPRALKAHQWYCKKFPKYPANRRA 276


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 647  LRPPGTKIRRIPKPDGNPFSLLLNFVSCPNY 555
            L PP T +RR+ +P   P   L + ++C NY
Sbjct: 1587 LNPPLTVVRRLNEPPYVPDDYLPSVMTCVNY 1617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,630
Number of Sequences: 5004
Number of extensions: 68041
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)