Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C03
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    79   3e-15
11_01_0535 + 4234282-4235082                                           35   0.061
09_01_0057 - 916973-917287,917371-917495,917587-918241                 30   1.7  
02_04_0581 - 24068122-24068355,24068693-24068906,24069675-240697...    30   1.7  
06_03_1077 + 27417255-27417386,27417504-27417557,27417637-274178...    29   5.3  
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    28   7.0  
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813...    28   7.0  

>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 45/110 (40%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
 Frame = -2

Query: 752 HPLYTAPCTTCYYIGLGGFVLCXLGNLSIHILLKNLRPP-GTKIRRIPKPDGNPFSLLLN 576
           HPLYT        IG G  +LC + N   HILL+NLR P G    +IP+        L N
Sbjct: 208 HPLYTPVSELQMKIGFGFGILCQIANFYCHILLRNLRSPSGNGGYQIPR------GFLFN 261

Query: 575 FVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKK 426
            V+C NYT E   WL F I T+     +F       M  WA+GKHR  KK
Sbjct: 262 IVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASIMTNWALGKHRRLKK 311


>11_01_0535 + 4234282-4235082
          Length = 266

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
 Frame = -2

Query: 749 PLYTAPCTTCYYIGLGGFVLCXLGNLSIHILLKNLRPPGTKIRRIPKPDGNPFSLLLNFV 570
           PL  A C     +GL  FV     N++    L  L+  G K  +IPK DG     L + V
Sbjct: 152 PLTVARCL----VGLALFVWGMWTNIAADRELLRLKEAG-KGYQIPK-DG-----LFDLV 200

Query: 569 SCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPD-YPKGRKA 393
           +CPNY  E   WL + ++     A  F       +   A  +   Y  +F D YP  RKA
Sbjct: 201 ACPNYFGETVEWLGYALVAWTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYPASRKA 260


>09_01_0057 - 916973-917287,917371-917495,917587-918241
          Length = 364

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 746 LYTAPCTTCYYIGLGGFVLCXLGNLSIHILLKNLRPPGTKIRR 618
           LY+AP +    IG      C   + S+  L   L PPG  I+R
Sbjct: 296 LYSAPASPSGVIGASACFSCDSSSSSVDSLFAALEPPGRPIKR 338


>02_04_0581 -
           24068122-24068355,24068693-24068906,24069675-24069755,
           24069853-24070024,24070806-24070884,24071384-24071477,
           24072065-24072147,24072284-24072401,24072457-24072461
          Length = 359

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 614 ECGVSSCRADEGSSKVCECSGFLXRKEQNLQV--LCSNK*YRE 736
           E G ++C AD      CEC G      +N     +C+NK +R+
Sbjct: 50  EAGCTNCSADSTCKDDCECRGLYMSCSKNCHCSDMCTNKPFRK 92


>06_03_1077 +
           27417255-27417386,27417504-27417557,27417637-27417801,
           27418131-27418496
          Length = 238

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -1

Query: 222 WVSDDILEGSG---FCLFWYATVWCGNNK*DYYNRTG 121
           WV D    G     F + W   +W  + + DYYN+TG
Sbjct: 43  WVIDPTTYGDSKTHFFVSWTVLIWMHDIQADYYNKTG 79


>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 410 GSLGIPSCSCDVYRWPK 460
           G +G+ +C C++Y WP+
Sbjct: 23  GRIGVGACGCEMYVWPR 39


>05_04_0083 +
           17780665-17780764,17781070-17781124,17781193-17781313,
           17781361-17781429,17782047-17782274,17782477-17782666,
           17783303-17783694,17784380-17784427,17784816-17785400
          Length = 595

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 228 PWWVSDDILEGSGFCLFWYATVWCGNNK 145
           PWW++   LEGSG    W    W   +K
Sbjct: 35  PWWLTGHDLEGSGCVWEWGLHPWLPKSK 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,267,815
Number of Sequences: 37544
Number of extensions: 422759
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)