Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C03
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha...   184   5e-47
Z68116-2|CAA92173.1|  243|Caenorhabditis elegans Hypothetical pr...    56   4e-08
Z68115-3|CAA92168.1|  243|Caenorhabditis elegans Hypothetical pr...    52   3e-07
Z68222-3|CAA92499.1|  253|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical p...    34   0.095
Z71178-11|CAA94885.2|  309|Caenorhabditis elegans Hypothetical p...    34   0.095
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha
           reductase familyprotein 1 protein.
          Length = 308

 Score =  184 bits (449), Expect = 5e-47
 Identities = 83/122 (68%), Positives = 93/122 (76%), Gaps = 2/122 (1%)
 Frame = -2

Query: 752 HPLYTAPC--TTCYYIGLGGFVLCXLGNLSIHILLKNLRPPGTKIRRIPKPDGNPFSLLL 579
           HPL+T P       Y GL GFV+   GNLSIHILL+NLRP GT+ RRIPKPDGNP SLL 
Sbjct: 181 HPLFTPPAFGDLQVYFGLAGFVISEFGNLSIHILLRNLRPAGTRERRIPKPDGNPLSLLF 240

Query: 578 NFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKGR 399
           N+VSCPNYTYE  SW+FF+IM +  PA +F  AGF QMA+WA GKHRNY KEFPDYPK R
Sbjct: 241 NYVSCPNYTYEVASWIFFSIMVQSLPAIIFTTAGFAQMAIWAQGKHRNYLKEFPDYPKNR 300

Query: 398 KA 393
           KA
Sbjct: 301 KA 302


>Z68116-2|CAA92173.1|  243|Caenorhabditis elegans Hypothetical
           protein F42F12.3 protein.
          Length = 243

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 32/89 (35%), Positives = 43/89 (48%)
 Frame = -2

Query: 659 LLKNLRPPGTKIRRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAA 480
           +L  LR PG    +IP         L  ++SCPNY  E   W+ + I+    PA  FA  
Sbjct: 155 ILMTLRKPGETGYKIPT------GFLYEYISCPNYFGEIMEWIGYAILGWNLPALAFAIF 208

Query: 479 GFYQMAVWAIGKHRNYKKEFPDYPKGRKA 393
            F  +   AI  H  YK++FP YP  R+A
Sbjct: 209 TFANIGPRAIAHHNWYKEKFPKYPPTRRA 237


>Z68115-3|CAA92168.1|  243|Caenorhabditis elegans Hypothetical
           protein F19H6.4 protein.
          Length = 243

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = -2

Query: 596 PFSLLLNFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFP 417
           P   L  ++SCPNY  E   W+ ++I+    PA  FA      +   A+  H+ YK+ FP
Sbjct: 170 PTGFLYEYISCPNYAGEIMEWIGYSILAWNLPALAFAIFTIANIGPRAVAHHKWYKETFP 229

Query: 416 DYPKGRK 396
            YP  R+
Sbjct: 230 GYPPNRR 236


>Z68222-3|CAA92499.1|  253|Caenorhabditis elegans Hypothetical
           protein ZK1251.3 protein.
          Length = 253

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 575 FVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPD-YPKGR 399
           ++SCPNY  E   W+ + +  +  PA  FA      +A  A+  H+ Y+K F + YP+ R
Sbjct: 186 YISCPNYFGECLQWIGYALAARSFPAIAFAFFIVCNLAPRAMSHHKWYQKMFGEQYPRDR 245

Query: 398 KA 393
            A
Sbjct: 246 HA 247


>Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical
           protein B0024.13b protein.
          Length = 342

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -2

Query: 578 NFVSCPNYTYEFGSWL-FFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKG 402
           N VSCP++ +E   +L  F ++                    A+  H  Y K FP YPK 
Sbjct: 274 NLVSCPHFLFEICIYLSLFLVIPDAYVYRFIIMFVCINQTFAALITHSWYHKTFPKYPKS 333

Query: 401 RKA 393
           RKA
Sbjct: 334 RKA 336


>Z71178-11|CAA94885.2|  309|Caenorhabditis elegans Hypothetical
           protein B0024.13a protein.
          Length = 309

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -2

Query: 578 NFVSCPNYTYEFGSWL-FFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKG 402
           N VSCP++ +E   +L  F ++                    A+  H  Y K FP YPK 
Sbjct: 241 NLVSCPHFLFEICIYLSLFLVIPDAYVYRFIIMFVCINQTFAALITHSWYHKTFPKYPKS 300

Query: 401 RKA 393
           RKA
Sbjct: 301 RKA 303


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 545 FGSWLFFTIMTKCAPAGLFAA--AGF-YQMAVWAIGKHRNYKK 426
           FG+  FF    K     LF    +G  Y+   WA+GKHR   K
Sbjct: 131 FGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAK 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,791
Number of Sequences: 27780
Number of extensions: 384596
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)