Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C01
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    27   2.5  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   7.5  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   9.9  

>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 347 LATVLYYTVWIIIAHVRDY 291
           +AT L Y V III HVRD+
Sbjct: 94  VATYLTYLVLIIIGHVRDF 112


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 479 TDPITD*RIVSEMDDAIELLKFERNCRLKPKGVFTL 372
           T+ I D  +V   +D+ ++L+    CR K  G+F L
Sbjct: 629 TEAIEDSVLVGRSEDSSDMLRRIGECRKKTMGMFRL 664


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 336 LVLHSLDNHSTRP*LHMLFPSPKQYEYSFEKALS 235
           +V   ++NHS+   L +L+ S K+  +SF+ A+S
Sbjct: 292 IVTLPVENHSSDAILTLLYNSVKESYHSFKHAMS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,762
Number of Sequences: 5004
Number of extensions: 43815
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)