Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C01
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 616 YYTSNRIIDCLIQILFTYTLFYL 548
           +YT N II C+     T  +FYL
Sbjct: 242 FYTVNLIIPCMGISFLTVLVFYL 264


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 616 YYTSNRIIDCLIQILFTYTLFYL 548
           +YT N II C+     T  +FYL
Sbjct: 251 FYTVNLIIPCVGITFLTVLVFYL 273


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 616 YYTSNRIIDCLIQILFTYTLFYL 548
           +YT N II C+     T   FYL
Sbjct: 246 FYTVNIIIPCMGISFLTVLTFYL 268


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 616 YYTSNRIIDCLIQILFTYTLFYL 548
           +YT N II C+     T   FYL
Sbjct: 246 FYTVNIIIPCMGISFLTVLTFYL 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,420
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)