Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B23
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.30 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.52 

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -3

Query: 445 PSVHCPSLHRPSLHRPSXHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIHRPNLRCRIYRP 266
           PS   PS  +PS        PS   P+L S    RPS+       P   RPN+  ++  P
Sbjct: 95  PSYSQPSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPP 154

Query: 265 SVHCSSRDYRRSGRPSVCY 209
             + SS  Y ++ + +  Y
Sbjct: 155 PSYSSSGSYSQTYQSNANY 173


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = -3

Query: 475  PGLHCPSXHCPSVHCPS----LHRPSLHRPSXHRPSLHRPNLRSPSIHRPSIYCPGLRCP 308
            P +  PS   P V  PS    + +PS+  P   +PS+  P + +PS   P +  P +  P
Sbjct: 1074 PSIPAPSG-APPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS-GAPPVPKPSVAAP 1131

Query: 307  YIHRPNLRCRIYRPSVHCSSRDYRRSGRPSVCYPS 203
             +  P+    + +PSV  +      SG P V  PS
Sbjct: 1132 PVPVPSGAPPVPKPSV-AAPPVPAPSGAPPVPKPS 1165



 Score = 29.1 bits (62), Expect = 0.52
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 445  PSVHCPSLHRPSLHRPSXHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIHRPNLRCRIYRP 266
            PSV  P +  PS   P   +PS+  P + +PS   P +  P    P +  P+    + +P
Sbjct: 1145 PSVAAPPVPAPS-GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203

Query: 265  SV 260
            SV
Sbjct: 1204 SV 1205



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -3

Query: 484  VHRPGLHCPSXHCPSVHCPSLHRPSLHRPSXHRPSLHRPNLRSPSIHRPSIYCPGLRCPY 305
            V +P +  P    PS   P +  PS   P    P+   P + +PS   PS+  P    P 
Sbjct: 1200 VPKPSVGVPPVPPPST-APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPS 1258

Query: 304  IH 299
             H
Sbjct: 1259 PH 1260



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 475  PGLHCPSXHCPSVHCPSLHRPSLHRPSXHRPSLHRPNLRSPS 350
            P +  P+   P V  PS   PS+  P    PS H     SP+
Sbjct: 1227 PPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPT 1268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 996,808
Number of Sequences: 5004
Number of extensions: 15692
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)