Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_B23
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979... 33 0.17
11_01_0492 + 3798217-3799064,3799977-3800157 29 2.2
03_06_0461 - 34107506-34107845,34107993-34108151,34108564-341087... 29 2.2
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636... 28 5.0
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568... 28 5.0
02_05_0808 - 31883413-31883813,31883903-31884377 28 5.0
05_01_0379 + 2975701-2976831 28 6.6
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 28 6.6
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421... 28 6.6
03_02_0341 - 7643426-7643973,7644340-7644505 27 8.7
>08_02_1547 + 27795664-27795674,27795743-27795892,27796182-27797906,
27799447-27799546,27799657-27800268,27800399-27800521,
27800905-27801039,27801108-27801209,27801716-27801778,
27801854-27802045,27802121-27802258,27802632-27802694,
27803068-27803466
Length = 1270
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 412 SLHRPSXHRPSLHRPNLRSPSIHRPSIYCPGLRCPYIHRPNLR 284
++ P RPSL P SP RPS+ P P+ HRP +R
Sbjct: 1180 TVRTPRERRPSLLLPLPWSPRKRRPSLLLPPPWSPWKHRPGVR 1222
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 442 SVHCPSLHRPSLHRPSXHRPSLHRPNLRSPSIHRPSIYCPGLR 314
+V P RPSL P P RP+L P P + PG+R
Sbjct: 1180 TVRTPRERRPSLLLPLPWSPRKRRPSLLLPPPWSPWKHRPGVR 1222
>11_01_0492 + 3798217-3799064,3799977-3800157
Length = 342
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 481 HRPGLHCPSXHCPSVHCP 428
H+ G S HCPS HCP
Sbjct: 319 HQEGCFSVSGHCPSCHCP 336
>03_06_0461 -
34107506-34107845,34107993-34108151,34108564-34108763,
34109042-34109213,34111127-34111350,34111438-34111644
Length = 433
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 427 SLHRPSLHRPSXHRPSLHRPNLRSPSIH 344
+LH+P L RP HR + RP R+PS H
Sbjct: 38 TLHQPFLTRPPPHRRQIARP--RAPSHH 63
>09_04_0281 -
16360082-16361059,16361608-16361688,16363287-16363650,
16363675-16364348
Length = 698
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = -3
Query: 481 HRP--GLHCPSXHCPSVHCPSLHRPSLHRPSXHRPSLHRPNLRSPSIHRPSI 332
H P GLH H P P L RP +P +P P L P P +
Sbjct: 513 HEPQSGLHWAQEHEPQPLQPQLGRPQPLQPQLGQPQPLHPQLGQPQPLHPQL 564
>06_03_0272 +
19053455-19053587,19054665-19056627,19056827-19056887,
19056975-19057198,19057573-19057642,19058453-19058515
Length = 837
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -3
Query: 499 VHCHGVHRPGLHCPSXHCPSVHCPSLHRPSLHRPSXHRPSLHRPNLRSPSIHRPSIY 329
+H +G H H PS + S + P +H P R + H + P+ R+ S H + Y
Sbjct: 263 LHWNGSH----HSPSLNVQSPNIPQVHAPLPTRQNLHGYAEPIPHARASSYHAGAGY 315
>02_05_0808 - 31883413-31883813,31883903-31884377
Length = 291
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 439 VHCPSLHRPSLHRPSXHRPSLHRPNLRSP 353
+H LHRP RPS H P HRP P
Sbjct: 38 LHDALLHRPRRRRPSRHFPP-HRPQPPPP 65
>05_01_0379 + 2975701-2976831
Length = 376
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 439 VHCPSLHRPSLHRPSXHRPSLHRPNLRSPSIHRPSIYCPGLRCPYI 302
V CP RP+ H HR L P H P +CPG RC ++
Sbjct: 186 VACPHAAHGCAARPAYHDVEAHR--LACP--HGPC-HCPGERCGFV 226
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -3
Query: 475 PGLHCPSXHCPSVHC-PSLHRP-SLHRPSXHRPSLHRP 368
P P H P C P RP S H P+ RP LH P
Sbjct: 396 PLAQAPPRHPPRPWCRPHTPRPRSPHSPTHPRPRLHHP 433
>03_06_0498 -
34341441-34341575,34341808-34341945,34342019-34342117,
34342320-34342400,34342548-34342610,34342717-34342764,
34343033-34343410,34345413-34345537,34345635-34345701,
34345797-34345856,34346495-34346621,34346670-34346986
Length = 545
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 370 PNLRSPSIHRPSIYCPGLRCPYIHRPNLRCRIYRPSVHCSSRDYRRSGRPS 218
PN P+ R + PG RC ++ R R P + R R GRPS
Sbjct: 88 PNPPRPNYSRRRFFYPGARCGHMRRAARRPPAVAPEMARPGRSSR--GRPS 136
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -3
Query: 496 HCHGVHRPGLHCPSXHCPSVHCPSLHRPSLHRPSXHRPS-LHRPNLRSPSIHRPSIYCPG 320
H H V P + P H P +H P + P H+P+ + P+ + PS P +Y P
Sbjct: 164 HHHIVLHPPVIVPPKHDHDHSLPPVHEPPVTVPD-HKPAPVTVPDHKPPSTTTP-VYAPP 221
Query: 319 LRCPYIHRP 293
P P
Sbjct: 222 KPTPIYGPP 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,196,029
Number of Sequences: 37544
Number of extensions: 127241
Number of successful extensions: 409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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