Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B21
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.2  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 242 NRRVCLLRDFTQ*L*GCHN 298
           N R+C+L+  T  L  CHN
Sbjct: 155 NERICILKSITCALQFCHN 173


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 457 DNKFIYKIKLFVIMGQLWTL 398
           D K++Y +    + G+LWT+
Sbjct: 437 DRKYLYMLMEACLGGELWTV 456


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 68  YLFAAHYNNYNVNC--LHLNVFFL 3
           Y +  + NNYN NC  L+ N+ ++
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 68  YLFAAHYNNYNVNC--LHLNVFFL 3
           Y +  + NNYN NC  L+ N+ ++
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 68  YLFAAHYNNYNVNC--LHLNVFFL 3
           Y +  + NNYN NC  L+ N+ ++
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 68  YLFAAHYNNYNVNC--LHLNVFFL 3
           Y +  + NNYN NC  L+ N+ ++
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYI 119


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 192 FYASLNL*VCKKLKIKSTDEYVCCETLLNNCRVVTIT---KIIVYLK*SSLNCV-LTI*M 359
           +Y S+   + K   +++   Y+CCE    +  V  IT   K + Y     + CV ++   
Sbjct: 196 YYISVEWDIIKVPAVRNEAFYICCEEPYPDI-VFNITLRRKTLFYTVNLIIPCVGISFLS 254

Query: 360 VLVFF 374
           VLVF+
Sbjct: 255 VLVFY 259


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 53  HYNNYNVNCLHLNVFFL 3
           +YNNYN   L+ N+ ++
Sbjct: 317 NYNNYNNKKLYYNINYI 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,349
Number of Sequences: 438
Number of extensions: 3663
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)