Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B20
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   1.6  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   2.8  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   2.8  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   3.7  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.7  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 414 WPFYNNITTLCDVPPTQQGSNYFSHN 491
           W   N  T  C VPP      +F++N
Sbjct: 20  WTLVNQATAECKVPPVSLSQGFFNYN 45


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 156 YIPNLFFHYFMEYYCKDDDTV 94
           YIP   F  F++ Y KDDDTV
Sbjct: 230 YIPYGGFDDFLDNYYKDDDTV 250


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 353 IISLYLFTLYRFYKELMDVAILLCLIILPIKYCKKKTKL*IANVIA 216
           I+ L + TL R  +    VAIL CL+I+P+    K   L I  +I+
Sbjct: 706 ILGLLIETLKRNTENT--VAILKCLLIIPLSILLKSKNLLIDTIIS 749


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 417 PFYNNITTLCDVPPTQQGSNYFSHNFHMHSMRLQSLIYTECVSI 548
           PF++++  +         SN F HN +  ++R  S+    C+ I
Sbjct: 25  PFHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCLKI 68


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 260 YCKKKTKL*IANVIA*IF*KLYKINTITQYKRFASTYLIYFFTILWN 120
           YC  K      N+   +  + + I++I   K+FAST   YF+  + N
Sbjct: 608 YCTMKGIYIYYNINGLVLIEHFPISSILNVKQFASTKCDYFYMNIQN 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,680
Number of Sequences: 5004
Number of extensions: 49878
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)