Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B20
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81047-13|CAB60284.1|  368|Caenorhabditis elegans Hypothetical p...    27   7.9  

>L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical
           protein K06H7.2 protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 556 VYLIETHSVYIKDCNLIECMWKLCEK*LLPCCVGGTSHKVVM 431
           V L E H + I++    E   K  EK +  CC G +S KV M
Sbjct: 138 VLLPEKHCIVIENSKYYEESVKFVEKWMKKCCYGVSSVKVGM 179


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 407 YYYSMACLLYV*CSRFWQIISLYLFTLYRFY 315
           Y+YS+  L ++  SR+W ++  Y   L+ F+
Sbjct: 3   YFYSLFSLDHLFISRYWFVVCSYCSLLFYFF 33


>Z81047-13|CAB60284.1|  368|Caenorhabditis elegans Hypothetical
           protein C41G6.15 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 371 CSRFWQIISLYLFTLYRFYKELMDVAILLCLIILP 267
           C+ FW + S + FT YR +  L D A+  C +  P
Sbjct: 171 CATFWTLYSTWKFTFYRVF-WLPDNAVESCKLYGP 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,532,196
Number of Sequences: 27780
Number of extensions: 275522
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)