Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B19
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611...    30   1.1  
01_01_0536 - 3926450-3928447                                           27   7.5  
01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549...    27   10.0 

>12_02_0117 -
           13860418-13860524,13860612-13860810,13860969-13861148,
           13861230-13861375,13862185-13862323,13863076-13863153,
           13863654-13863722,13863806-13863925,13864792-13864875,
           13864961-13865032,13865204-13865345,13866016-13866023
          Length = 447

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = -2

Query: 546 IRPAD-EQIFFKSSRAGVLDH----QSTLKTAQNVRETVHSVRRPRCSSGKTSTDLL 391
           + PA  EQIF  SS AGV +     Q   + ++ V E V+ +RR RCS  + S  +L
Sbjct: 326 VNPATLEQIFGVSSLAGVPNQLVLEQYDNELSRKVNEVVNEIRRQRCSYLRYSLQVL 382


>01_01_0536 - 3926450-3928447
          Length = 665

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 273 AEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSC 413
           A V+W   I+     G+  +S  + V  +R S +  AVT V +L +C
Sbjct: 125 APVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSAC 171


>01_06_0876 -
           32654209-32654238,32654357-32654672,32654833-32654901,
           32655238-32655275,32655418-32655478,32655550-32655617,
           32655729-32655889,32656687-32656751,32656883-32656956,
           32658158-32658245,32658800-32658879,32659168-32659224,
           32659332-32659404,32659524-32659762,32659846-32660025,
           32660150-32660440
          Length = 629

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 540 PADEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSV 436
           P  E +F  +  AG+  H+  +K   N+RE+VH V
Sbjct: 458 PGSETLFPGNEVAGIY-HEIAMKDGINLRESVHGV 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,016
Number of Sequences: 37544
Number of extensions: 198865
Number of successful extensions: 498
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)