Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B16
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    42   9e-05
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    40   5e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    33   0.030
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    33   0.040
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    33   0.053
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    32   0.092
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.6  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   3.5  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    27   3.5  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   4.6  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   6.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   8.0  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = -3

Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGAN 605
           DE   IAS   + +MPTFVF +NGK++D  +GAN
Sbjct: 61  DEQRQIASGLGVKAMPTFVFFENGKQIDMLTGAN 94


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = -3

Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGAN 605
           D+  +IA+E  +++MP+F   KNG+K++E  GAN
Sbjct: 58  DQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 694 DIASEYXINSMPTFVFVKNGKKLDEFSG 611
           D+ SEY I   PT    KNGK++ ++SG
Sbjct: 85  DLCSEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +3

Query: 435 KLISSNSLQTLKTFFIYIL-KTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVL---SLS 602
           +L++ +S   +  + +Y+L KTYT +FF    SF R ++  L+    C   + L      
Sbjct: 12  ELLNDSSSNMIWLYEVYMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCANFIALFRVIFG 71

Query: 603 TLAPENSSSFLPFLT 647
           T+   +     PF+T
Sbjct: 72  TIFVYSPDGITPFMT 86


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 32.7 bits (71), Expect = 0.053
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGAN 605
           ++  DIA  + +N++P FV +   K L   SGAN
Sbjct: 60  EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGANV 602
           D+  DIA +  + ++PT V  + G++LD   GA+V
Sbjct: 75  DKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 402 IFCIPEAANTKKLISSNSLQTLKTFFIYIL 491
           ++C+P +    +LI SNS Q   +F+ Y L
Sbjct: 308 LYCLPPSNVMYELIKSNSQQPFVSFYAYAL 337


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 408 CIPEAANTK--KLISSNSLQTLKTFFIYILKTY 500
           CI     TK  KL+SSN+LQ +  F+  ++K +
Sbjct: 401 CISSTFITKAFKLVSSNTLQAMSHFYATMIKLF 433


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 481 IKNVFNVCNEFEDINFFVFAASGMQKILVLL 389
           +KN  +   EFE I F+ + AS +Q+I  L+
Sbjct: 397 LKNKVHTIKEFEKIVFYFYEASDLQQIRSLV 427


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = +3

Query: 366 LFIELFDYNRTNIFCIPEAANTKKLISSNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRL 545
           L   LF Y  +N+    ++ +  + +  NSL  +K+F   +LKT+ C + +F + +  +L
Sbjct: 317 LLYTLFSYLDSNL----KSTSRDRYLVYNSL--IKSFVNTVLKTFRCRYTQFLIFWASQL 370

Query: 546 RTTLVSIYL 572
                 I+L
Sbjct: 371 DPEFTDIFL 379


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 447 SNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVLSLSTL 608
           S SL ++  F + +L  + CF     L+    LR    SIYL  R+  + +S L
Sbjct: 710 SPSLHSILRFLLLLL-AFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFL 762


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 429 TKKLISSNSLQTLKTFFIYILKTYTCFFFKF 521
           T    SS    +L  +F+ +++ + CFFF F
Sbjct: 45  TSYWFSSGPFISLSFWFLSLVRGFVCFFFMF 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,049
Number of Sequences: 5004
Number of extensions: 42272
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)