Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_B16
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288 42 6e-04
12_01_1027 + 10529545-10529777,10530269-10530668 40 0.002
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 40 0.002
04_04_0598 - 26514226-26514545,26516080-26516302 39 0.004
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 38 0.006
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 38 0.008
05_01_0489 - 4077365-4077502,4078105-4078227,4079019-4079135,407... 38 0.008
02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005... 36 0.024
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 36 0.032
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 36 0.042
05_05_0229 - 23457438-23457629,23457706-23457828,23457913-234580... 36 0.042
03_06_0330 - 33178114-33178206,33178317-33178382,33179704-331798... 33 0.22
07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215 33 0.29
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 32 0.51
01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774 31 0.90
02_01_0454 + 3263666-3265375 29 3.6
05_03_0497 - 14715267-14715548,14715648-14715830,14715911-147166... 28 6.3
04_04_0782 + 28038292-28038413,28038577-28038778,28039221-280392... 28 8.4
>07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288
Length = 122
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGANVD 599
DE +++A +Y + +MPTF+F+K+G + D+ GA D
Sbjct: 68 DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 103
>12_01_1027 + 10529545-10529777,10530269-10530668
Length = 210
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 706 DECEDIASEYXINSM-PTFVFVKNGKKLDEFSGA 608
DE E+IA Y +N + PTF FVK G+K+D GA
Sbjct: 44 DELEEIADSYDVNGVVPTFTFVKAGQKIDMIQGA 77
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGAN 605
DE D +S + I + PTF F+KNG+++D+ GAN
Sbjct: 583 DELMDFSSSWDIRATPTFFFLKNGEQVDKLVGAN 616
>04_04_0598 - 26514226-26514545,26516080-26516302
Length = 180
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGA 608
DE DIAS+Y + S+PT + KNG+K D GA
Sbjct: 132 DENPDIASQYGVRSIPTMMIFKNGEKKDAVIGA 164
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGAN 605
DE +A + ++S+P+F FV+NGK++D+ GA+
Sbjct: 699 DELNSVAYRWNVSSVPSFFFVRNGKEIDKVVGAD 732
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -3
Query: 706 DECEDIASEYXINSM-PTFVFVKNGKKLDEFSGAN 605
DE E + Y I + PTF FVK+G+K+D+ GAN
Sbjct: 1038 DELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGAN 1072
>05_01_0489 -
4077365-4077502,4078105-4078227,4079019-4079135,
4079243-4079263
Length = 132
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGAN 605
D+ D +S + I + PTF F+KN K++D+ GAN
Sbjct: 84 DDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGAN 117
>02_05_0085 -
25697860-25698142,25698631-25698946,25700481-25700518,
25700955-25701036,25701815-25702016
Length = 306
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGA 608
DE DIA+++ I S+PT + KNG+K D GA
Sbjct: 165 DENPDIATQFGIRSIPTMMIFKNGEKKDAVIGA 197
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGAN 605
+E +I+ Y + ++P FVF+K GK +D GAN
Sbjct: 60 EEQPEISEAYGVTAVPYFVFLKEGKTVDTLEGAN 93
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 35.5 bits (78), Expect = 0.042
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGANVD 599
DE + IA ++ + +MPTF+F+K G D GA D
Sbjct: 74 DELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKD 109
>05_05_0229 -
23457438-23457629,23457706-23457828,23457913-23458026,
23462062-23462597,23463258-23464545
Length = 750
Score = 35.5 bits (78), Expect = 0.042
Identities = 10/31 (32%), Positives = 23/31 (74%)
Frame = -3
Query: 697 EDIASEYXINSMPTFVFVKNGKKLDEFSGAN 605
+++ ++Y + + PTF+F+KN +++D+ G N
Sbjct: 700 QELVTQYDVRATPTFIFMKNNEEIDKLVGGN 730
>03_06_0330 -
33178114-33178206,33178317-33178382,33179704-33179826,
33179930-33180067
Length = 139
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKK 629
DE ++A ++ + +MPTFV +K GK+
Sbjct: 84 DELSEVARQWKVEAMPTFVLIKGGKE 109
>07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215
Length = 138
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGANVD 599
DE ++A + + +MPTFV + G+++ GA+ D
Sbjct: 83 DELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKD 118
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSGANVD 599
D+ + ++S+ + +MPTF +K+ + +++ GAN D
Sbjct: 74 DDVQSVSSKLGVKAMPTFFLIKDKEVVNKIVGANPD 109
>01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774
Length = 187
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 697 EDIASEYXINSMPTFVFVKNGKKLDEFSGANVD 599
+ +A E I +PTF +K+GK + E +GA +D
Sbjct: 143 KSLAKELGIKVVPTFKILKDGKVVKEVTGAKLD 175
>02_01_0454 + 3263666-3265375
Length = 569
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 405 FCIPEAANTKKLISSNSLQTLKTF 476
FC+P A T LISSN L L+T+
Sbjct: 389 FCLPSKALTDDLISSNFLSWLQTY 412
>05_03_0497 -
14715267-14715548,14715648-14715830,14715911-14716668,
14716762-14717167,14717274-14717399,14717506-14717625,
14717675-14718463,14718554-14718709,14718800-14718898,
14718989-14719108,14719165-14719251
Length = 1041
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 108 LTPCLCA*GQRTTRXEPGGGSGE 40
LTPC+C GQRT P GGS E
Sbjct: 822 LTPCVC--GQRTFGVHPIGGSTE 842
>04_04_0782 +
28038292-28038413,28038577-28038778,28039221-28039246,
28039750-28039969
Length = 189
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 706 DECEDIASEYXINSMPTFVFVKNGKKLDEFSG 611
DEC + I PTF F ++G+K+DE G
Sbjct: 146 DECPETTQN--IRYTPTFHFYRDGEKVDEMLG 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,093,659
Number of Sequences: 37544
Number of extensions: 223524
Number of successful extensions: 423
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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