Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B13
         (749 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03093 Cluster: Capsid protein VP2; n=217; Polyomavirus...    44   0.003
UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine pneumot...    40   0.065
UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2; ...    39   0.15 
UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine polyoma...    38   0.26 
UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Re...    36   1.4  
UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|R...    36   1.4  
UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster polyom...    35   1.9  
UniRef50_Q8I342 Cluster: Putative uncharacterized protein PFI053...    33   7.5  
UniRef50_Q8D3H7 Cluster: Carbamoyl-phosphate synthase small chai...    33   9.9  

>UniRef50_P03093 Cluster: Capsid protein VP2; n=217;
           Polyomavirus|Rep: Capsid protein VP2 - Simian virus 40
           (SV40)
          Length = 352

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -3

Query: 726 GGANQRTAPQWMLPLLLGPFRS 661
           GGANQRTAPQWMLPLLLG + S
Sbjct: 284 GGANQRTAPQWMLPLLLGLYGS 305


>UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine
           pneumotropic virus|Rep: Capsid protein VP2 - Murine
           polyomavirus (strain Kilham) (MPyV)
          Length = 341

 Score = 39.9 bits (89), Expect = 0.065
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 726 GGANQRTAPQWMLPLLLG 673
           GGANQR+AP WMLPLLLG
Sbjct: 272 GGANQRSAPDWMLPLLLG 289


>UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2;
           Goose hemorrhagic polyomavirus|Rep: Putative
           uncharacterized protein - Goose hemorrhagic polyomavirus
          Length = 326

 Score = 38.7 bits (86), Expect = 0.15
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -3

Query: 726 GGANQRTAPQWMLPLLLG 673
           GGANQR AP WMLPL+LG
Sbjct: 257 GGANQRAAPDWMLPLILG 274


>UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine
           polyomavirus|Rep: Capsid protein VP2 - Bovine
           polyomavirus (BPyV)
          Length = 353

 Score = 37.9 bits (84), Expect = 0.26
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = -3

Query: 735 GSGGGANQRTAPQWMLPLLLG 673
           G+ GGA QR AP W+LPLLLG
Sbjct: 270 GAPGGAEQRVAPDWLLPLLLG 290


>UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Rep:
           Putative VP2 - Crow polyomavirus
          Length = 333

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -3

Query: 726 GGANQRTAPQWMLPLLLG 673
           GGA+QR+ P WMLPL+LG
Sbjct: 263 GGAHQRSCPDWMLPLILG 280


>UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|Rep:
           Putative VP2 - Finch polyomavirus
          Length = 354

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -3

Query: 726 GGANQRTAPQWMLPLLLG 673
           GGA+QR AP W+LPLLLG
Sbjct: 286 GGAHQRHAPDWLLPLLLG 303


>UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster
           polyomavirus|Rep: Capsid protein VP2 - Hamster
           polyomavirus (HaPyV)
          Length = 345

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -3

Query: 726 GGANQRTAPQWMLPLLLG 673
           GGA+QR  P WMLPL+LG
Sbjct: 300 GGAHQRVTPDWMLPLILG 317


>UniRef50_Q8I342 Cluster: Putative uncharacterized protein PFI0535w;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFI0535w - Plasmodium falciparum (isolate 3D7)
          Length = 227

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 246 NYKFIGTSDYMFTNNSTSSHIKAKLIFQNHNFTSISLNNI 365
           NYK + T ++++  N     +K  LI+QNHN  + SL N+
Sbjct: 40  NYKNVITQNFIYAVNIVIIILKEILIYQNHNSLNNSLKNV 79


>UniRef50_Q8D3H7 Cluster: Carbamoyl-phosphate synthase small chain;
           n=2; Enterobacteriaceae|Rep: Carbamoyl-phosphate
           synthase small chain - Wigglesworthia glossinidia
           brevipalpis
          Length = 376

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 228 NILFKYNYKFIGTSDYMFTNNSTSS-HIKAKLIFQNHNFTSISLNNIDFCR 377
           N +  + Y  IG       NN +S   +KA +++Q HN  S   N + F R
Sbjct: 54  NQIVAFTYPHIGNIGIEINNNESSKIQVKAVILYQTHNIISDFRNKLSFSR 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,925,029
Number of Sequences: 1657284
Number of extensions: 11874033
Number of successful extensions: 25250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25240
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)