Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B13
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81107-4|CAB03227.1|  206|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL110479-5|CAB60314.2|  397|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z81107-4|CAB03227.1|  206|Caenorhabditis elegans Hypothetical
           protein R07H5.4 protein.
          Length = 206

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 232 YYSNIIINLSGLVIICLQIIAHHHTSK 312
           YY+ I++  + +VIIC+ +  HH+  K
Sbjct: 170 YYTEILLVTAVIVIICIAVGLHHYKKK 196


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 615 PPRTICDHSRPRVHITTT*VLTPFTFSSYLCVSKCES 505
           PP+ +C     R  IT   +  P  F  Y CVS CES
Sbjct: 62  PPKCVCTEGNVRNIITGPSL--PALFKPYNCVSTCES 96


>AL110479-5|CAB60314.2|  397|Caenorhabditis elegans Hypothetical
           protein Y105C5B.7 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 523 TQVAAKSKWCKYLRSCNVYTWTTVVANSPWRLDSSNVPSC 642
           T+  A+ KW +   + N   WT V+ + PW   S     C
Sbjct: 225 TETQAQYKWLQEDLAQNKKKWTIVMFHRPWYCSSKKKKGC 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,818
Number of Sequences: 27780
Number of extensions: 298076
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)