Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B12
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   113   3e-26
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    77   3e-15
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    64   2e-11
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   4.2  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   7.3  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   9.6  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  113 bits (271), Expect = 3e-26
 Identities = 50/72 (69%), Positives = 59/72 (81%)
 Frame = -2

Query: 655 KFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPN 476
           KFDSS DRG PF   IG  ++IRGWDEGV KMS+GE+AKLT +PDY YG +G PG+IPPN
Sbjct: 36  KFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPN 95

Query: 475 STLIFDVELLRL 440
           STL+FDVELL +
Sbjct: 96  STLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 38/71 (53%), Positives = 48/71 (67%)
 Frame = -2

Query: 652 FDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNS 473
           FD +  +GKPF F +G+ EVIRGWD GVA M  G   K+T     AYG Q  PG IP NS
Sbjct: 292 FDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNS 349

Query: 472 TLIFDVELLRL 440
           TL+F+V+L+R+
Sbjct: 350 TLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 31/62 (50%), Positives = 38/62 (61%)
 Frame = -2

Query: 631 GKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVE 452
           GKPF F +G  EVI+GWD G+  M VG    +      AYG +  PG IP NS L+FDV+
Sbjct: 299 GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVK 357

Query: 451 LL 446
           LL
Sbjct: 358 LL 359


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 174 TFLKSILSL*FHHNTYLHLRDNCIYIY 94
           TFLK I     H   Y + +DNCIY+Y
Sbjct: 255 TFLKGISRRSGHQMVY-NPKDNCIYLY 280


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 319 YTNIVYL*WKYIYIYAIRKNFIL*VNKFMVRLINEIL 209
           +  I+Y  W  +  + I   + L V KF+V+L+++I+
Sbjct: 3   FATILYSIWVVLSSFVILSAYQLEVRKFLVKLLSKIV 39


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 522 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 653
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 631 GKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAY 512
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,323
Number of Sequences: 5004
Number of extensions: 51011
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)