Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B11
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   264   9e-72
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.1  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    27   2.8  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   3.7  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   4.9  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.6  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  264 bits (646), Expect = 9e-72
 Identities = 128/178 (71%), Positives = 142/178 (79%), Gaps = 1/178 (0%)
 Frame = -1

Query: 605 MEGFQVTTMEEAAEVGXIFVTTTGXIDIICKEHLLRMKDDAIVCNIGHFDCEIDVAWLDN 426
           M+GF+VTTMEEA + G IFVTTTG  DII  EH   MK+D+IVCNIGHFD EIDVAWL  
Sbjct: 255 MDGFEVTTMEEAVKEGQIFVTTTGCRDIIRGEHFNEMKEDSIVCNIGHFDVEIDVAWLKA 314

Query: 425 NAKKV-NIKQHVDRYELENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELW 249
           NAK V NIK  VDRYEL+NG HII+LA GRLVNLGCATGH SFVMS SFTNQVLAQI LW
Sbjct: 315 NAKDVVNIKPQVDRYELKNGRHIILLADGRLVNLGCATGHPSFVMSCSFTNQVLAQIALW 374

Query: 248 TKADTYPIGVHTLPKKLDEEVAALHLDHLGVKLTKLTPKQAKYIGVSREGPYKPEHYR 75
           T   +YP+GVH LPKKLDEEVA LHL  LGVKLT LT  Q+ Y+G+  +GPYK +HYR
Sbjct: 375 TDNTSYPLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPVDGPYKADHYR 432


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -2

Query: 136 LNKPN----TLVSLEKDLTSQSITEXNXXRSD 53
           +NKPN    TL  L KDL  Q + E N  +SD
Sbjct: 795 INKPNVDYLTLKELPKDLQKQILKESNLQKSD 826


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 170 DHLGVKLTKLTPKQAKYIGVSREGPYKPEHYRD 72
           DHLGV+ T L  ++ +Y  + ++ PY  + + D
Sbjct: 292 DHLGVESTVLDKRRLQYEKLLKDSPYDYDTWLD 324


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 283 NELDITKEEWPVAQPKLTSLPA 348
           NE ++TK + P+ +PKL   P+
Sbjct: 281 NERELTKHKLPIVKPKLAVFPS 302


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 497 MKDDAIVCNIGHFDCEIDVAWLDNNAKKVNIKQHVD 390
           + +D IVC  G    +ID   LD N    NI +H D
Sbjct: 408 VNEDDIVCFQGSLWTQIDKNALDYNDSADNIDEHKD 443


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 305  SFVMSNSFTNQVLAQIELWT-KADTYPIGVHTLPKKL 198
            SF++  S T+Q+ A   LW  KA+ Y     T+P  +
Sbjct: 1445 SFILETSGTSQLFAHQILWNMKANLYKDEAATVPDSI 1481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,434
Number of Sequences: 5004
Number of extensions: 47125
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)