Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B11
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888    178   3e-45
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    28   5.0  
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    28   6.6  
04_03_1037 - 21901989-21902468,21903308-21903526,21903984-219041...    28   6.6  
04_03_0873 + 20455860-20456042,20456864-20457102,20457596-204576...    28   6.6  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score =  178 bits (433), Expect = 3e-45
 Identities = 93/164 (56%), Positives = 113/164 (68%), Gaps = 5/164 (3%)
 Frame = -1

Query: 605 MEGFQVTTMEEAAEVGXIFVTTTGXIDIICKEHLLRMKDDAIVCNIGHFDCEIDVAWLDN 426
           MEG QV T+E+      IFVTTTG  DII  +H+ +MK++AIVCNIGHFD EID+  L+ 
Sbjct: 269 MEGLQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLET 328

Query: 425 --NAKKVNIKQHVDRYEL-ENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIE 255
               K++ IK   DR+   E    IIVLA GRL+NLGCATGH SFVMS SFTNQV+AQ+E
Sbjct: 329 YPGVKRITIKPQTDRWVFPETNTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLE 388

Query: 254 LWTKADT--YPIGVHTLPKKLDEEVAALHLDHLGVKLTKLTPKQ 129
           LW +  T  Y   V+ LPK LDE+VA LHL  LG +LTKL+  Q
Sbjct: 389 LWKEKSTGKYEKKVYVLPKHLDEKVACLHLGKLGARLTKLSKSQ 432


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -1

Query: 512  EHLLRMKDDAIVCNIGHFDCEIDVAWLDNNAKKVNIKQHVDRYELENGNHIIVLAAGRLV 333
            +H +   DDA+     HFD + + A L  +  +  +   + RY+ E  N  ++ A   LV
Sbjct: 2755 KHFIPSDDDALSLVYKHFDMKHEAASLLESRAEQYMNSWLSRYDKERRNDELLEAMHHLV 2814

Query: 332  NL 327
             +
Sbjct: 2815 EM 2816


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 551 FVTTTGXIDIICKEHLLRMKDDAIVCNIGHF 459
           F+      D+  K H++RMK  A +CN  HF
Sbjct: 289 FLNAQSTNDMFAKLHVVRMKKVACLCNEMHF 319


>04_03_1037 -
           21901989-21902468,21903308-21903526,21903984-21904106,
           21904225-21904392
          Length = 329

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 242 ADTYPIGVHTLPKKLDEEVAALHLDHLGVKLTKLTPKQAKYIGVSRE 102
           A T+    H  P+KLDE+V       +G +++  +PK  +  G   E
Sbjct: 192 AQTHDNTKHAKPEKLDEKVQDAKTSKVGAEVSDRSPKHKRDSGEGAE 238


>04_03_0873 +
           20455860-20456042,20456864-20457102,20457596-20457692,
           20457816-20457857,20458060-20458186,20458879-20458991,
           20459063-20459126,20459218-20459311,20459393-20459501,
           20459803-20459859,20460064-20460126,20460158-20460195,
           20460835-20461028,20461266-20461477
          Length = 543

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 407 IKQHVDRYELENGNHIIVLAAGRLVNLGCATGHS-SFVMSNSF 282
           +++ V  ++ EN   ++VL +  LV+LGCATG     V S+ F
Sbjct: 383 LQEEVLPFQKENQQVVLVLTSS-LVHLGCATGQERENVQSDDF 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,172
Number of Sequences: 37544
Number of extensions: 290012
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)