Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B09
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    30   0.39 
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    28   1.6  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   3.6  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   4.8  

>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +1

Query: 250 FYFEDLQIRLIIGLKVFKSYF*IVFLHLFVSIFFLLQKILYN*FSPAVTLAI 405
           +Y     I  ++GLK FK Y       L+ S   L +K+LY  FSP  TL +
Sbjct: 621 YYMYKQDIDNVVGLKDFKVYLKTTLNRLYNSK--LTRKVLYYLFSPLFTLEL 670


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 551 ITKITGCPKKGLSQNMLQYQKCKNIKKK 634
           IT+ TGC   GL+ N  Q  +C N   K
Sbjct: 142 ITEFTGCNLVGLNNNDYQISRCNNYAVK 169


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -2

Query: 567 PVIFVILIIVTQNAVTTLY*KQKSDSI*SPEKYLVD 460
           P+IFV+LI +T+ AV  L  +++ DS  + E Y V+
Sbjct: 144 PLIFVLLITLTKEAVDDLK-RRRRDSYANNEIYTVN 178


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 674 YISSNKKLPI*RSFSFLYFYIFDTAACFGL 585
           +I+  KK+ + R FSF  F IF T A + L
Sbjct: 392 WINHEKKIDLWRPFSFWLFSIFCTIAAYYL 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,980
Number of Sequences: 5004
Number of extensions: 55077
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)