Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B09
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical...    29   2.6  
Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical
           protein T03F7.6 protein.
          Length = 237

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = +1

Query: 229 KLTNMCLFYFEDLQIRLIIGL-------KVFKSYF*IVFLHLFVSIFFLLQKILYN 375
           +L+N   ++F  L I  + GL        V KS F ++F  +FVSI +L+  I+ N
Sbjct: 23  RLSNSYKYWFSCLMILFVAGLGLYLYMMNVVKSMFSVIFSTIFVSILYLISFIVRN 78


>AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical
           protein Y39B6A.47 protein.
          Length = 887

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 22  IKYYIMYDNFKNKLRCAWYEFF-YVLLRLPLGALFQLHTNLS*LLRYRER*KTRTKHTG 195
           +K  I + NF+ K    WY    Y++  LP+   F+ +     LLR  ER     KH G
Sbjct: 189 MKKVIYWLNFRVKKYATWYSHATYLIEHLPMNQKFETYRKSWNLLRMFERIAMTWKHYG 247


>Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical
           protein K03D3.4 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -1

Query: 553 YINHSYSKCCYYFILKTKIGQYLKPR--KVFGR--QYFLFVLSTISRG*YFPIQLRV 395
           YI   Y  CC  ++L   IG  L+P   K  G   Q+FL ++  IS   Y P+ + V
Sbjct: 152 YIVFVYLACCSRYMLSAVIGSSLEPYGWKFLGPIVQHFLTIILFISVLLYIPVIISV 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,199,959
Number of Sequences: 27780
Number of extensions: 301340
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)