Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B08
         (533 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Y3S0 Cluster: Putative uncharacterized protein; n=2; ...    34   1.8  
UniRef50_Q54Y48 Cluster: Putative uncharacterized protein; n=1; ...    33   4.1  

>UniRef50_Q4Y3S0 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 1029

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +1

Query: 286 CLYCKYKNYNFCGN*NEANISISLCRLFFLNCVSDYF--IYLNILMP-ITLRFQNYI-IK 453
           CL   YKN NFC   N     IS+ + F + C+S+YF  I+  IL   I   F+N I + 
Sbjct: 186 CLNTAYKNSNFC---NSTFFFISINKYFNILCISNYFKTIFSFILCDNICNYFENSILLS 242

Query: 454 KVYNMYFKAIEPK 492
           K +N    + E K
Sbjct: 243 KKFNEKLASQEKK 255


>UniRef50_Q54Y48 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 314

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 328 NFHKNCNSYICNRDINLKLPLQHL-SLQASTTT*HQVGRKL 209
           N +KNC  Y CN + N   P+  + ++Q  TTT + VG+ L
Sbjct: 10  NIYKNCKRYYCNSNTNNGKPVDLVFNIQNPTTTTNGVGKNL 50


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,696,096
Number of Sequences: 1657284
Number of extensions: 8240138
Number of successful extensions: 15971
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15961
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)