Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B08
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.1  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    25   9.4  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   9.4  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   9.4  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 345 FNFLMPAFFFKLCIRLFYLFEYSHAHNVKISKLY 446
           F  L   FFF LC+ +F  F +S +H + ++ L+
Sbjct: 150 FPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILF 183


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 367 KAGIRKLKCLLHFNFHKN 314
           K  +R++K L+HF  H+N
Sbjct: 65  KRALREIKLLIHFRNHRN 82


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 367 KAGIRKLKCLLHFNFHKNCNSY 302
           +  I KL CL+H    + C+SY
Sbjct: 158 RKNIEKLACLVHNEAMRRCSSY 179


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 364 LFFLNCVSDYFIYLNILMPITLRFQNYIIK 453
           L  LN V++  + +NI +  +L F+NYI K
Sbjct: 36  LKLLNIVAEDTVDINIKLAASLYFKNYIKK 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,836
Number of Sequences: 5004
Number of extensions: 38107
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)