Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B07
         (596 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    42   0.015
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    40   0.034
UniRef50_Q54G62 Cluster: Putative uncharacterized protein; n=1; ...    39   0.10 
UniRef50_UPI00015BAEE6 Cluster: binding-protein-dependent transp...    33   5.1  
UniRef50_Q55CB6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_A0BND1 Cluster: Chromosome undetermined scaffold_118, w...    33   5.1  
UniRef50_A3RE63 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    32   8.9  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 41.5 bits (93), Expect = 0.015
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +1

Query: 214  GRQRLGSAPGIAEVHGRR 267
            GRQRLGSAPGIAEVHGRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 40.3 bits (90), Expect = 0.034
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +2

Query: 257 MGDGNYSPSGGPYARLPTKAIKK 325
           MGDGN+SPSG PYA LPT+A  K
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_Q54G62 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 705

 Score = 38.7 bits (86), Expect = 0.10
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
 Frame = -3

Query: 564 QFLIKFYPTTYFSIKPXKFAQFLLMYNNNLRSFFMLICKFYSCLWQLKFCYIYINKISLS 385
           +FL  +Y   + S  P  F     + +   R+F ML+C     LW +    I I  +  S
Sbjct: 3   RFLTNYYNKVFNS--PKNFDD---ISSKKTRNFLMLLCFLGIILWII----IIIVVVKDS 53

Query: 384 ILYISFFNDLFQPRIALPX--FFFIAXVGKRAYGPPDGE*LPSPMDFSN 244
           +  ++F  +  + +I +P   F F   V + A   P GE +PS ++FSN
Sbjct: 54  LNRLTFMTNEIENQIIIPNLIFTFYKNVSQYAINSPSGEVIPSNIEFSN 102


>UniRef50_UPI00015BAEE6 Cluster: binding-protein-dependent transport
           systems inner membrane component; n=1; Ignicoccus
           hospitalis KIN4/I|Rep: binding-protein-dependent
           transport systems inner membrane component - Ignicoccus
           hospitalis KIN4/I
          Length = 259

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 284 LMVSSYRRPWTSAMPGAEPSRCLPYLIAL 198
           L + S+R PW S +PGA+PS+   Y + +
Sbjct: 106 LYLLSWRFPWPSPLPGADPSKAAEYALVI 134


>UniRef50_Q55CB6 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1362

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = -3

Query: 492 MYNNNLRSFFMLICKFYSCLWQLKFCYIYINKISLSILYISFFNDLFQ 349
           +YNN L   F +IC  Y CL  + F     NK++LSIL+++  N L +
Sbjct: 198 IYNNELNLIFPIIC--YKCLKHIDF-----NKLTLSILFLNQANYLIK 238


>UniRef50_A0BND1 Cluster: Chromosome undetermined scaffold_118,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_118,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 369

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
 Frame = -3

Query: 588 LLHFXYVTQFLIKFYPTTYFSIKPXKFAQFLLMYNNNLRS-FFMLICKFYSCLWQLKF-- 418
           +LH  Y   FLI       ++ K   F  +L  YN  + S  + L+ +F      + F  
Sbjct: 98  ILHLNYQLSFLIVVLDINSYNFKHFAFFMYLDPYNPGVISCLYSLLPQFQQFYRSISFKT 157

Query: 417 CYIYINKISLSILYISFFNDLFQPRIALPXF 325
            Y  I  I ++I++I  FN      +A+P F
Sbjct: 158 SYFIIRIIIITIVFI-MFNINHHSNLAIPTF 187


>UniRef50_A3RE63 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=2; Metaseiulus occidentalis|Rep: NADH-ubiquinone
           oxidoreductase chain 4 - Metaseiulus occidentalis
           (western predatory mite)
          Length = 437

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 19/81 (23%), Positives = 33/81 (40%)
 Frame = -3

Query: 558 LIKFYPTTYFSIKPXKFAQFLLMYNNNLRSFFMLICKFYSCLWQLKFCYIYINKISLSIL 379
           ++ FY     +I    F    +MY  NL  FF+  C F +    L   Y++     L ++
Sbjct: 59  ILSFYIIMLINIYLFNFDDNKIMYLFNLLVFFLFYCFFVN---NLILMYVFFEACLLPLM 115

Query: 378 YISFFNDLFQPRIALPXFFFI 316
            + F N L   R+    +  +
Sbjct: 116 IVIFLNGLTMERLKASTYLML 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,721,296
Number of Sequences: 1657284
Number of extensions: 9315545
Number of successful extensions: 21297
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21281
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)