Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B07
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    31   0.13 
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    29   0.39 
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   1.6  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    27   2.1  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   3.6  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   4.8  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 501 FLLMYNNNLRSFFMLICKFYSCLWQLKFCYIYINKISLSIL 379
           FL++Y+  + SFF +  KF   +  LKFC ++  K   S+L
Sbjct: 30  FLILYSQEILSFFFMCSKF--SMNSLKFCVLFSFKTVYSLL 68


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -3

Query: 591 LLLHFXYVTQFLIKFYPTTYFSIKPXKFAQFLLMYNNNLRSFFMLIC 451
           LLL    V  F+ KFY +T F      F Q L  YN     FF ++C
Sbjct: 107 LLLSNSNVQPFVNKFYTSTVFP----SFLQILKQYNVAQEEFFAILC 149


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -3

Query: 534 YFSIKPXKFAQFLLMYNNNLRSFFMLICKFYSCLWQLKFCYIYINKISLSILYISF--FN 361
           Y S +P  F+      ++ LRS +  + + +       F   Y+NK +LS  ++S   FN
Sbjct: 165 YHSDEPYAFS---FSRSDTLRSLYKQVMEAFQISDGTSFRLWYLNKSNLSSRFVSLSEFN 221

Query: 360 DLFQPRIAL 334
           D  QP IAL
Sbjct: 222 D--QPAIAL 228


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 573 YVTQFLIKFYPTTYFSI--KPXKFAQFLLMYNNNLRSFFMLI 454
           YV QF   F      ++  KP  F +FLL    + RSF+ML+
Sbjct: 209 YVNQFRYHFMSQKQTNVLSKPEWFFEFLLKVFRSNRSFYMLM 250


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 432 WQLKFCYIYINKISLSILYISFFNDL 355
           WQL+ C I+ + I  +  Y++FF  L
Sbjct: 221 WQLRLCEIFHDPILYTTNYLTFFKAL 246


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 296 HTAHLMVSSYRRPWTSAMPGAEPSRCLPYLIALXYFNYVL 177
           H  H M SS   PW      A  ++CL   +     +Y+L
Sbjct: 400 HGYHFMASSTELPWLRVTCNAIVTKCLDSQLPSVRLSYIL 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,143
Number of Sequences: 5004
Number of extensions: 40272
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)