Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B07
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    28   4.9  
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    28   6.5  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     28   6.5  

>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 285 PDGE*LPSPMDFSNARGRAKPLPTVPHCPXLF--QLCTVNKYKDNQNDSK*SKQTITNVE 112
           PD   L S + F+   G +  L   P CP  F  +   + + KDN  +S  +  T+TN+E
Sbjct: 799 PDDRPLMSSIVFTLENGSSVALLPAPSCPGHFTQRSSEIEQMKDNTQNSM-NTFTLTNIE 857


>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
            4066416-4066933,4067435-4067694,4068089-4068594,
            4068667-4071319
          Length = 2107

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 84   FFLXWXHRSFQHLLLSALITSNHFDCLYIYLQYI 185
            F   W   + QH++L  +    H  CLY  L+ I
Sbjct: 1669 FLHQWAKSNLQHVILKRIFEEEHPKCLYYNLKII 1702


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +2

Query: 218 GSGLALPLALLKSMGDGNYSPSGGPYARL 304
           GS LA  L LL  M      PSG  YARL
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,049,001
Number of Sequences: 37544
Number of extensions: 241796
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)