Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B07
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine rec...    31   0.82 
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    28   5.8  
U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein56 protein.
          Length = 298

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 594 LLLLHFXYVTQFLIKFYPTTYFSI-KPXKFAQFLLMYNNNLRSFFMLI-CKFYSCLWQLK 421
           L L  F  +T F+I       F++  P ++     + N  +  F + I   F + L+  K
Sbjct: 84  LFLSEFSILTHFIISI--NRAFAVWAPYRYETLFSVRNTKILKFIVWIFISFVAILFYEK 141

Query: 420 FCYIYINKIS 391
           FCYIY +  S
Sbjct: 142 FCYIYYDSAS 151


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -3

Query: 585 LHFXYVTQFLIKFYPTTYFSIKPXKFAQFLLMYNNNLRSFFMLICKFYSCLWQ 427
           +H  Y+T+     Y +  F+ K  KF+ F+  Y   +R+  +    F+   +Q
Sbjct: 103 IHTLYMTEIFYYRYQSCIFNYKTHKFSYFVKSYVYLIRTLIITTSIFHFATYQ 155


>U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical
           protein T25D1.1 protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 498 LLMYNNNLRSFFMLICKFYSCLWQLKFCYIY 406
           LL+Y N LRS  + +C+    L+ L+F + Y
Sbjct: 133 LLLYRNLLRSKALPLCRLMLILFFLEFAFAY 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,740,268
Number of Sequences: 27780
Number of extensions: 228091
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)