Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B06
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   1.7  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   2.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   3.8  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    24   5.1  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    24   5.1  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    24   6.7  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    23   8.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    23   8.8  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 284  EYSAPDGTPVKFTYTADENGYQPQ-SELLPVAPPMP 180
            +Y   +   V+ T T DE+G+Q Q +    VA P+P
Sbjct: 955  DYEGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIP 990



 Score = 25.0 bits (52), Expect = 2.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 275  APDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPK 132
            A +G+ V  T   D N     S +  V+   P  + R+ DY+++H P+
Sbjct: 1124 ALEGSAVSKTDDVD-NVVSGHSNVNGVSKSRPNIVERSEDYVISHLPE 1170


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 130 PKP*KSYKSRRFRAQRPPPKKSGLYFEHHTLSISI 26
           PKP KS ++  F    PPP  +G     H L+I+I
Sbjct: 50  PKP-KSIEAPMFPILLPPPNITGKLHIGHALTITI 83


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 298 SKVNMNTLRLTEPL*SSRIQLTRTDTNHRV 209
           +++N N +   EP   S I L++T T+H++
Sbjct: 413 NELNNNVVEKAEPAPVSEIPLSKTLTSHKI 442


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 105 PEDSEHNDPRQRKVDFISSTIRYQYQ*HR*SNE 7
           PE  E N P +RK D I  +  Y  +  R  N+
Sbjct: 650 PEALEVNTPIKRKADLIQPSYNYDGEKRRKEND 682


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 111 INPEDSEHNDPRQRKVDFISS 49
           I  E S +ND  +RK+DF+SS
Sbjct: 401 IKRELSYYNDATKRKLDFMSS 421


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 307 FSPSKVNMNTLRLTEPL*SSRIQLTRTDTNHRVSYFQLLLQCLKPS 170
           F+  +  ++ LR    L   RIQ  R + + R   F+  ++CL+ S
Sbjct: 173 FNDQQDEVDELRERITLKEERIQQMRNEASQRRFEFKTTIECLEES 218


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 241 QLTRTDTNHRVSYFQLLLQCLK 176
           Q+T  D    VSY  LLL+CL+
Sbjct: 340 QITGYDYMSLVSYVHLLLKCLE 361


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = -3

Query: 272 PDGTPVKFTY--TADENGYQPQSELLPVAPPMP--EAIRRAIDYILAHPPKTETVKKL*I 105
           P+ + + F Y  T+D+ G   +   +  A  +   E    A  YI     + E  +KL +
Sbjct: 682 PEASDISFQYSNTSDKEGSSDKDSSIEEASSVKTQENGLNATLYI-----QMEYCEKLSL 736

Query: 104 QKIQSTTTPAKEKWTLFR 51
           Q I     P  E W LFR
Sbjct: 737 QDIIRDKIPVDEMWRLFR 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,204
Number of Sequences: 5004
Number of extensions: 24679
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)