Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_B06
(328 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0003 - 12238606-12239336,12239550-12239804,12239886-122399... 29 0.65
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 28 2.0
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 27 3.5
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748... 27 3.5
06_03_0730 - 23948801-23949079,23949528-23949588,23949828-239499... 27 3.5
06_01_0360 + 2581774-2582288,2582414-2582609 27 3.5
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502... 27 4.6
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 27 4.6
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 27 4.6
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 27 4.6
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 26 6.1
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 26 6.1
04_01_0179 + 2021977-2024890,2025117-2025610 26 6.1
12_01_0918 + 9072774-9072863,9073385-9073539,9073834-9074213,907... 26 8.0
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 26 8.0
02_05_0114 + 25958834-25961296 26 8.0
02_04_0412 + 22674903-22674969,22675179-22675519 26 8.0
>07_03_0003 -
12238606-12239336,12239550-12239804,12239886-12239988,
12240393-12240713,12241427-12241480,12242134-12242274
Length = 534
Score = 29.5 bits (63), Expect = 0.65
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = -3
Query: 182 PEAIRRAIDYILAHPPKTETVKKL*IQKIQSTTTPAKEKWTLFRAPYVININNIDSQMNL 3
PEA R++ + P KT +KKL I + T A + F AP V N+ I Q+NL
Sbjct: 68 PEAFFRSVKPRVVAPQKTLPIKKLAIPVPPTFKTMADKTLREFAAPSVDNV-AIGPQINL 126
>02_05_0336 +
28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -1
Query: 253 SSRIQLTRTDTNHRVSYFQLLLQCLKPSVALLTTFSLTH 137
+S Q ++++ +H S Q+ +C +PS+A + +S+TH
Sbjct: 852 TSEFQQSKSNRDHHNSR-QVDRECTQPSIASMANYSVTH 889
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 236 DENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETV 120
+E Y P S L+ A + AIRR + A PP +
Sbjct: 1869 EEKMYVPNSRLMSCASLLSAAIRRGVAGCRASPPSASAI 1907
>11_04_0154 +
14172294-14172459,14172993-14173054,14174781-14174859,
14174964-14175164,14175420-14175610
Length = 232
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 142 THLRPKP*KSYKSRRFRAQRPPPKKSGLYFEHHTLSISI 26
THL P P + ++R+ R P P SGL F H L I +
Sbjct: 25 THL-PGPRRKPRARQGRPT-PRPDPSGLQFSHAVLEIGV 61
>06_03_0730 -
23948801-23949079,23949528-23949588,23949828-23949954,
23950449-23950485,23950987-23951061,23951489-23951598,
23952700-23952754,23952833-23952949,23953201-23953355,
23953577-23953634,23954239-23954460
Length = 431
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 275 APDGTPVKFTYTADENGYQPQSELLPVAPPMPEAI 171
A G Y +D G P+S L P PP P+ +
Sbjct: 378 ATTGATEGSNYRSDHFGASPRSALAPPPPPSPDLV 412
>06_01_0360 + 2581774-2582288,2582414-2582609
Length = 236
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 323 EFGRPILAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVA 192
E G + IQGQY ++ P+ VK + QP S + A
Sbjct: 154 ELGEATMRIQGQYSFAFPNLVEVKRHSAKNPQEDQPMSATMATA 197
>12_02_1007 -
25248653-25249078,25249956-25250021,25250108-25250260,
25250961-25251336,25252001-25252143
Length = 387
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 302 AIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPP 135
++Q Q + + G+P Y A PQS + P PP P + +LA PP
Sbjct: 262 SLQHQLKAMSVVGSPPALLYPA---AVHPQSYMHPPPPPPPVTMPMHPGMVLAAPP 314
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 302 AIQGQYEYSAPDGTPVKFTYTAD 234
+I G Y PD P+ F YTAD
Sbjct: 417 SIDGVYTRDFPDTPPIVFDYTAD 439
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 247 RIQLTRTDTNHRVSYFQLLLQCLKPSVALLTT-FSLTHLRPKP 122
R+++T T+ N+R++Y Q L PS LTT FS + P
Sbjct: 303 RVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLNP 345
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 170 RRAIDYILAHPPKTETVKKL*IQKIQSTTTPAKEK 66
RR + +L HP V + + ++ STT P K
Sbjct: 493 RRIVSLLLLHPASPHPVAAISLGRLLSTTAPVSSK 527
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 302 AIQGQYEYSAPDGTPVKFTYTADEN 228
A G Y PD PV F YT DE+
Sbjct: 460 ASAGVYTRDFPDTPPVVFDYTGDES 484
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 26.2 bits (55), Expect = 6.1
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = -3
Query: 317 GRPILAIQGQYEYSAPDGTPVKFTYTADENGY--QPQSELLPVAPPMPEAIRRAIDYILA 144
GRP L+I G G+ ++F E + QP++E + + I+ +
Sbjct: 473 GRPFLSIAGA-NIDVGTGS-IRFHINGKEKKFKFQPRTEQCSMVRIKYGPNPQNIEEVEV 530
Query: 143 HPPKTETVKKL*IQKI--QSTTTPAKEKWTL 57
PPKT+++ K +Q + TT P W L
Sbjct: 531 EPPKTDSLVKF-MQNFLEKETTMPRNRYWRL 560
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = -3
Query: 323 EFGRPILAIQGQYEYSAPD-GTPVKFTYTADENGY-----QPQSELLPVAPPMPEAIRRA 162
+FGR + G Y Y AP+ G +K T +D Y + + P+ P +P+ +
Sbjct: 954 DFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPDG-QHV 1012
Query: 161 IDYI 150
+D++
Sbjct: 1013 VDWV 1016
>12_01_0918 +
9072774-9072863,9073385-9073539,9073834-9074213,
9074299-9075273,9076001-9076134
Length = 577
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 293 GQYEYSAPDGTPVKFTYTADEN 228
G Y PD PV F YT DE+
Sbjct: 418 GVYTRDFPDTPPVVFDYTGDES 439
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 263 TPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAID 156
TP + YTA NGY Q E+ + E I + I+
Sbjct: 880 TPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIE 915
>02_05_0114 + 25958834-25961296
Length = 820
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 263 TPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAID 156
TP + YTA NGY Q E+ + E I + I+
Sbjct: 762 TPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIE 797
>02_04_0412 + 22674903-22674969,22675179-22675519
Length = 135
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 187 GGATGSNSLCGWYPFSSAVYVNFTGVPSGAEYSY 288
GG+TG N++ +YP + G P+G YSY
Sbjct: 47 GGSTGYNAVSAYYPPPTP-----AGWPNGGGYSY 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,178,015
Number of Sequences: 37544
Number of extensions: 176167
Number of successful extensions: 557
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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