Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_B06
(328 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 28 1.4
Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical pr... 27 4.2
AC024796-9|AAK29893.2| 454|Caenorhabditis elegans Hypothetical ... 26 5.6
Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical pr... 26 7.4
AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl ... 26 7.4
AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 26 7.4
Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z78019-2|CAB01451.1| 347|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z49909-12|CAA90114.2| 121|Caenorhabditis elegans Hypothetical p... 25 9.7
AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein. 25 9.7
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 200 PVAPPMPEAIRRAIDYILAHPPKTETVKK 114
P+ PP+PE I + +LA P +V K
Sbjct: 57 PIPPPLPEPIPELVQILLAAEPNKPSVPK 85
>Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical
protein T08G5.2 protein.
Length = 728
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 251 FTYTADENGYQPQSELLPVAPPMPEAIRRAI 159
F +AD+ G + ++E++PV PEA+ + I
Sbjct: 162 FGLSADKGGTKHRAEMVPVRYMAPEAVEKMI 192
>AC024796-9|AAK29893.2| 454|Caenorhabditis elegans Hypothetical
protein Y48G1C.1 protein.
Length = 454
Score = 26.2 bits (55), Expect = 5.6
Identities = 6/23 (26%), Positives = 18/23 (78%)
Frame = -3
Query: 305 LAIQGQYEYSAPDGTPVKFTYTA 237
+ ++ ++ +S PDG+P+++T ++
Sbjct: 268 ITVKAEFNFSIPDGSPIQWTISS 290
>Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical
protein T01B7.6 protein.
Length = 765
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 137 PKTETVKKL*IQKIQSTTTPAKEKWTL 57
PK + + +Q++Q+ PAK W L
Sbjct: 449 PKKQVIPPTPVQRVQAAPPPAKNCWNL 475
>AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform b protein.
Length = 496
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 167 DGWLQALEEQLEVTHSVVGIRSRQLYT*TSQGFRQAQSIHIDLGWR-ESAGRIHL 328
D ++ ++ + TH+ + +RQLY +GFR ++ ID +R E+ HL
Sbjct: 313 DWKIEEAQKNVLRTHTTA-VSARQLYQLAQEGFRPSKLFSIDRVFRNETLDATHL 366
>AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform a protein.
Length = 552
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 167 DGWLQALEEQLEVTHSVVGIRSRQLYT*TSQGFRQAQSIHIDLGWR-ESAGRIHL 328
D ++ ++ + TH+ + +RQLY +GFR ++ ID +R E+ HL
Sbjct: 369 DWKIEEAQKNVLRTHTTA-VSARQLYQLAQEGFRPSKLFSIDRVFRNETLDATHL 422
>Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical
protein F43G9.9 protein.
Length = 192
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 128 RS*VGERECSQ*RDGWLQALEEQLEVTHSVVGIRSRQLYT*TSQGFRQAQSIHI 289
RS +G +E R W +EQL+ H+V+G++ T+ G + H+
Sbjct: 142 RSGLGPKEAQGDRREWT---DEQLKAGHNVIGLQMGSNKGATASGLNMGNTRHM 192
>Z78019-2|CAB01451.1| 347|Caenorhabditis elegans Hypothetical
protein ZK863.5 protein.
Length = 347
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 34 LITYGARNKVHFSLAGVVV 90
LI YG R K+HF L ++
Sbjct: 199 LIMYGLRRKIHFKLRNAIL 217
>Z49909-12|CAA90114.2| 121|Caenorhabditis elegans Hypothetical
protein C14A4.10 protein.
Length = 121
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 126 NREKVINPEDSEH 88
++EKV+NPED +H
Sbjct: 15 DKEKVVNPEDKKH 27
>AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein.
Length = 192
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 128 RS*VGERECSQ*RDGWLQALEEQLEVTHSVVGIRSRQLYT*TSQGFRQAQSIHI 289
RS +G +E R W +EQL+ H+V+G++ T+ G + H+
Sbjct: 142 RSGLGPKEAQGDRREWT---DEQLKAGHNVIGLQMGSNKGATASGLNMGNTRHM 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,326
Number of Sequences: 27780
Number of extensions: 145470
Number of successful extensions: 519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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