Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B04
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    26   5.8  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   7.7  

>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 145 YELLAFFKGI*AVTRLSSVSYFFVNSLVGSYLAFSSSQNSAS 270
           +EL+ F  G+   T L+S+S     S +   LAF  +  +A+
Sbjct: 340 FELVTFASGVLGTTELASMSVLSTTSTLSYNLAFGVAAAAAT 381


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 455 GPDRQCHICLCTVQGERGPQPSR 523
           GP  +C  C+  ++GE+   PSR
Sbjct: 475 GPQSKCIKCVVDIKGEKKDTPSR 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,384
Number of Sequences: 5004
Number of extensions: 55608
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)