Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B04
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50027-2|CAA90335.1|  188|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z98853-2|CAB57902.2|  371|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z99281-41|CAB16523.1|  444|Caenorhabditis elegans Hypothetical p...    28   7.1  

>Z50027-2|CAA90335.1|  188|Caenorhabditis elegans Hypothetical
           protein C39B10.3 protein.
          Length = 188

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -3

Query: 299 EKMIGHLINHEAEFWEELKAKYDPTNEFTKKYETELKRVTA 177
           E+M+  L++   ++ EEL+ K D   + TK+YE EL++V A
Sbjct: 81  EEMLTFLVDASKKYDEELEEKRDENKKATKEYE-ELEKVAA 120


>Z98853-2|CAB57902.2|  371|Caenorhabditis elegans Hypothetical
           protein R08A2.2 protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
 Frame = +1

Query: 214 VNSLVGSYLAFSSSQNSASWLMR*PIIFSVPPFCALVHLAQLVSRASLM*DLSSLPS--A 387
           +N L G Y   +  +    W      +F+  P CA V    L     +  + +S  S  A
Sbjct: 136 MNRLYGFYEELARKRGGRMWRQY-QNVFNELPLCARVGQRILCMHGGISQNCNSWESFKA 194

Query: 388 VHWPFSRMQCT*GMRSRRLDMSWSRSTVSYLSVYCSGRARATAVKASRQTITVFI 552
           +  P + + C  G++   +D+ W+  T    + +   + RA +V    + + VF+
Sbjct: 195 LKKPNTPLTCDEGLQ---VDLMWADPTQDKCNTFAMNKQRAISVVFGEKGLDVFL 246


>AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4a protein.
          Length = 397

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 153 QLISCNKIYLVDLIFNSTHIAFFKVPTKTWNWDEKDFAKG 34
           +L S   ++L++LIF    + F  +P   W    KD+A G
Sbjct: 85  RLQSARNVFLLNLIFTDLILVFTAIPVTPWYAMTKDWAFG 124


>AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4b protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 153 QLISCNKIYLVDLIFNSTHIAFFKVPTKTWNWDEKDFAKG 34
           +L S   ++L++LIF    + F  +P   W    KD+A G
Sbjct: 85  RLQSARNVFLLNLIFTDLILVFTAIPVTPWYAMTKDWAFG 124


>Z99281-41|CAB16523.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.22a protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 342 LESFLDVRFKFLAFCGTLALFED--AMYVGNEEPTVRYE 452
           ++ +LDV++++L++C  L   +D    +V  +EP  R E
Sbjct: 246 IKKYLDVKYEYLSYCLKLKEMDDEEVEFVAIQEPLYRVE 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,501
Number of Sequences: 27780
Number of extensions: 312219
Number of successful extensions: 876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)