Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B03
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...   184   1e-47
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...   138   9e-34
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    28   1.5  
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros...    27   2.0  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   4.6  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   8.0  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score =  184 bits (448), Expect = 1e-47
 Identities = 99/209 (47%), Positives = 129/209 (61%), Gaps = 5/209 (2%)
 Frame = -1

Query: 703 QIYSLD----PHHHGTDLCLSGTAEMSLAGLLANSVHNINDLPLKLAAVSRCYRAETSNL 536
           QIY LD    P       CL GTAE+SLA L      N N    K+  VSR YR E    
Sbjct: 240 QIYELDSYTSPLVSSPKQCLIGTAEISLAALGFKKTFN-NFTERKVVGVSRAYRREAGAR 298

Query: 535 AEE-RGIYRVHQFNKVEMFVVTTSEQSEEMLEVIRNTQEQIFTPLGISVRVLDMPPYELG 359
            +E RG+YR+H+F KVE+F  T   +S EM   I N Q++    L I  R+L+MP  ELG
Sbjct: 299 GKENRGLYRLHEFTKVELFAWTHPSRSSEMFNEIVNFQKEFVETLKIPARILNMPTAELG 358

Query: 358 AAAYRKYDMEAWMPGRQAYGEISSCSNCTDYQSRRLNITYKTLNDEYCYVHTLNGTACAI 179
           ++A +KYD+EAWMP RQ+YGEI+S SNC +YQ+RRL   Y+   D   +VHTLNGTA AI
Sbjct: 359 SSASQKYDIEAWMPARQSYGEITSASNCLEYQARRLLTRYRNDKDS-GFVHTLNGTAAAI 417

Query: 178 PRMLIALIETHQHPKGKIMXPETXQKFMN 92
           PR++IA++E HQ   G +  PET   +++
Sbjct: 418 PRLIIAILENHQQEDGTVKVPETLVPYIH 446


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score =  138 bits (333), Expect = 9e-34
 Identities = 75/173 (43%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
 Frame = -1

Query: 592 LPLKLAAVSRCYRAETSNLAEER-GIYRVHQFNKVEMFVVTTSEQSEEMLEVIRNTQEQI 416
           LPLK A  S CYR E  +   +  GI+RVH F K+E FV+T  E+S E    + N  E  
Sbjct: 259 LPLKYAGYSTCYRREAGSHGRDAWGIFRVHAFEKIEQFVLTDPEKSWEAFTEMINHAEDF 318

Query: 415 FTPLGISVRVLDMPPYELGAAAYRKYDMEAWMPGRQAYGEISSCSNCTDYQSRRLNIT-- 242
           +  L +  R++ +    L  AA +KYD+EAW P +  Y E+ SCSNCTDYQSR L I   
Sbjct: 319 YKSLELPYRIVAIVSGALNNAAAKKYDLEAWFPFQGEYKELVSCSNCTDYQSRNLEIRCG 378

Query: 241 YKTLND-EYCYVHTLNGTACAIPRMLIALIETHQHPKGKIMXPETXQKFMNGK 86
            K + D E  YVH LN T CA  R L  ++E +Q P G +  P+  Q +M GK
Sbjct: 379 VKKMGDREKKYVHCLNSTLCATERALCCILENYQTPDG-VNVPKVLQPYMGGK 430


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -1

Query: 667 DLCLSGTAEMSLAGLLANSVHNINDLPLKLAAVSRCYRAETSNLAEERGIYRVHQFNKVE 488
           ++CL+ T E  +   +A  + +   LP+++  + R +R E   L    G+ R  +F   +
Sbjct: 108 EMCLAPTHEEDVTRTMATIIDSQKQLPIRVYQIGRKFRDE---LRPRGGLLRGREFMMKD 164

Query: 487 MFVVTTSEQSE-EMLEVIRNTQEQIFTPLGI 398
           ++     + S  +  E +       F  +G+
Sbjct: 165 LYTFDIDKASAMKTYEDVLQAYHTFFKEVGL 195


>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
           protein phosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 156

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 440 HFKHFFRLFRSSNYKHFNFIELMNSVN 520
           H KH  R   +S++K+F++I  M+S N
Sbjct: 69  HTKHLARKLSTSDFKNFDYIFAMDSSN 95


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 316 QASMPPCHIFCK 351
           + ++PPCHIFC+
Sbjct: 491 EMALPPCHIFCQ 502


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 214 YVHTLNGTACAIPRMLIALIETH 146
           +V+T+   +CA+PR ++ +I +H
Sbjct: 155 FVYTVFNISCALPRNIVQMIISH 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,312
Number of Sequences: 5004
Number of extensions: 55570
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)