Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_B03
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 186 2e-47
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 131 5e-31
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 123 1e-28
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 33 0.17
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 31 1.2
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 2.7
>11_06_0371 + 22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 186 bits (453), Expect = 2e-47
Identities = 99/230 (43%), Positives = 137/230 (59%), Gaps = 16/230 (6%)
Frame = -1
Query: 703 QIYSLDPHHHGTDLCLSGTAEMSLAGLLANSVHNINDLPLKLAAVSRCYRAETSNL-AEE 527
++YS+D +D CL GTAE+ + G+ +S+ +DLP K A S C+R E A
Sbjct: 325 KVYSID----NSDQCLIGTAEIPVGGIHMDSILPDSDLPRKYVAYSHCFRTEAGAAGAAT 380
Query: 526 RGIYRVHQFNKVEMFVVTTSEQSEEMLEVIRNTQEQIFTPLGISVRVLDMPPYELGAAAY 347
RG+YRVHQF+KVEMFV E+S++ E + +E+++ LG+ + LDM +LGA AY
Sbjct: 381 RGLYRVHQFSKVEMFVFCRPEESDKCHEELITIEEELYASLGLHFKTLDMATGDLGAPAY 440
Query: 346 RKYDMEAWMPGRQAYGEISSCSNCTDYQSRRLNITY---------------KTLNDEYCY 212
RK+D+EAWMPG YGEISS SNCTDYQSRRL I + K + +
Sbjct: 441 RKFDIEAWMPGLDRYGEISSASNCTDYQSRRLGIRFRPSPADPPPANAKKGKGSSGPTQF 500
Query: 211 VHTLNGTACAIPRMLIALIETHQHPKGKIMXPETXQKFMNGKKCXMKNTK 62
VHTLN TA A+PR++I ++E Q G ++ PE + FM G + TK
Sbjct: 501 VHTLNATAVAVPRLIICILENFQQEDGTVVIPEPLRPFMGGLEVLSPKTK 550
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 131 bits (317), Expect = 5e-31
Identities = 77/210 (36%), Positives = 113/210 (53%), Gaps = 7/210 (3%)
Frame = -1
Query: 697 YSLDPHHHGTDLCLSGTAEMSLAGL-LANSVHNINDLPLKLAAVSRCYRAET-SNLAEER 524
Y L G + L T+E L L + ++ +LP++ A S C+R E S+ +
Sbjct: 167 YYLKDEGDGEEKYLIATSEQPLCAYHLGDRIYPA-ELPIRYAGYSTCFRKEAGSHGRDTA 225
Query: 523 GIYRVHQFNKVEMFVVTTSEQSE--EMLEVIRNTQEQIFTPLGISVRVLDMPPYELGAAA 350
GI+RVHQF K+E F VT+ +E EM E + E + +G+ +++ + L AA
Sbjct: 226 GIFRVHQFEKIEQFCVTSPNDNESWEMHEEMIKNSEDFYKEIGLPYQLVSIVSGALNDAA 285
Query: 349 YRKYDMEAWMPGRQAYGEISSCSNCTDYQSRRLNITY-KTLNDEYC--YVHTLNGTACAI 179
+KYD+EAW P + Y E+ SCSNCTD+Q+RRL I Y + NDE +VH LN T A
Sbjct: 286 AKKYDLEAWFPASKTYRELVSCSNCTDFQARRLGIGYGQKKNDEQSKQFVHMLNSTLTAT 345
Query: 178 PRMLIALIETHQHPKGKIMXPETXQKFMNG 89
R L ++E Q G + P+ Q +M G
Sbjct: 346 ERTLCCILENFQRENG-VEVPKALQPYMGG 374
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 123 bits (297), Expect = 1e-28
Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Frame = -1
Query: 586 LKLAAVSRCYRAET-SNLAEERGIYRVHQFNKVEMFVVTTSEQSE--EMLEVIRNTQEQI 416
++ A S C+R E S+ + GI+RVHQF K+E F VT+ +E EM E + E
Sbjct: 245 MRYAGYSTCFRKEAGSHGRDTAGIFRVHQFEKIEQFCVTSPNDNESWEMHEEMIKNSEDF 304
Query: 415 FTPLGISVRVLDMPPYELGAAAYRKYDMEAWMPGRQAYGEISSCSNCTDYQSRRLNITY- 239
+ +G+ +++ + L AA +KYD+EAW P + Y E+ SCSNCTD+Q+RRL I Y
Sbjct: 305 YKEIGLPYQLVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDFQARRLGIGYG 364
Query: 238 KTLNDEYC--YVHTLNGTACAIPRMLIALIETHQHPKGKIMXPETXQKFMNG 89
+ NDE +VH LN T A R L ++E Q G + P+ Q +M G
Sbjct: 365 QKKNDEQSKQFVHMLNSTLTATERTLCCILENFQKENG-VEVPKALQPYMGG 415
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 610 VHNINDLPLKLAAVSRCYRAETSNLAEERGIYRVHQFNKVEMFVVTTS 467
+H+ D P+++A + YR E S G++RV F ++ + TTS
Sbjct: 399 LHSYRDFPIRVAELGTVYRYELSGSLH--GLFRVRGFTQISLSTTTTS 444
>08_01_1069 + 10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = -1
Query: 634 LAGLLANSVHNINDLPLKLAAVSRCYRAETSNLAEERGIYRVHQFNKVEMFVVTTSEQSE 455
L+ +L+ + + D P LA++ + + +LAEE KVE +TTSE
Sbjct: 928 LSKVLSEKLPELLDFPKDLASLELAAKVQLKSLAEEMQAIN-KGLEKVEQ-ELTTSENDG 985
Query: 454 EMLEVIRNTQEQIFTPLGISVRVL 383
+ E+ R T + + VR L
Sbjct: 986 PVSEIFRKTLKDFLSGAEAEVRSL 1009
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/61 (18%), Positives = 31/61 (50%)
Frame = -1
Query: 514 RVHQFNKVEMFVVTTSEQSEEMLEVIRNTQEQIFTPLGISVRVLDMPPYELGAAAYRKYD 335
+ ++N + V S +E++ +++ Q+ RV++ PP+EL + + +++
Sbjct: 100 KASEYNSHKWTVYVRSATNEDLSVIVKRVVFQLHPSFTNPTRVVEQPPFELSESGWGEFE 159
Query: 334 M 332
+
Sbjct: 160 I 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,402,326
Number of Sequences: 37544
Number of extensions: 335835
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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