Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B03
         (706 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    25   1.8  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   9.4  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   9.4  

>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 440 DTEHTRTNLYTTGNICKGF 384
           +TEHT  N+Y   N C+ F
Sbjct: 399 ETEHTNMNIYLVQNCCQLF 417


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 298 HHKLDDQASMPPCHIFCKPLH 360
           HH LD   S+  C +   P H
Sbjct: 401 HHLLDSSESLNTCRLHGSPTH 421


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 136 WDADVSQSRL*AFLEW 183
           WDAD SQ+    F+ W
Sbjct: 902 WDADASQADASRFVRW 917


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 712,693
Number of Sequences: 2352
Number of extensions: 14084
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)