Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_B03
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 199 1e-51
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 199 1e-51
Z68882-1|CAA93105.1| 487|Caenorhabditis elegans Hypothetical pr... 142 2e-34
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 31 0.61
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 31 0.61
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ... 29 2.4
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ... 29 2.4
U23171-1|AAC46702.2| 334|Caenorhabditis elegans Serpentine rece... 28 5.7
AF100306-5|AAC68924.2| 318|Caenorhabditis elegans Hypothetical ... 28 7.5
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 27 9.9
U53332-4|ABS83852.1| 215|Caenorhabditis elegans Hypothetical pr... 27 9.9
U53332-3|ABS83853.1| 218|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical ... 27 9.9
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 199 bits (486), Expect = 1e-51
Identities = 99/187 (52%), Positives = 127/187 (67%), Gaps = 1/187 (0%)
Frame = -1
Query: 658 LSGTAEMSLAGLLANSVHNINDLPLKLAAVSRCYRAETSNLAEERGIYRVHQFNKVEMFV 479
LSGTAEM +A L N + LP++L ++SRC+R E S A E +YRVH+F+KVEMFV
Sbjct: 237 LSGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASEAKLYRVHEFSKVEMFV 296
Query: 478 VTTSEQSEEMLEVIRNTQEQIFTPLGISVRVLDMPPYELGAAAYRKYDMEAWMPGRQAYG 299
V+T EQS L+ + Q+ F LG+ R L+MP ELGA+A RK+D+EAWMPGR+ YG
Sbjct: 297 VSTPEQSAAELDYLVEVQKGTFQALGVHCRQLEMPSEELGASAARKFDIEAWMPGRKLYG 356
Query: 298 EISSCSNCTDYQSRRLNITYKTLNDEYCYVHTLNGTACAIPRMLIALIETHQH-PKGKIM 122
E+SS SNCTD+QSRRL I YKT + Y HT NGTA A R LI+++ET Q+ KG
Sbjct: 357 EVSSASNCTDFQSRRLGIKYKTADGTTKYAHTCNGTALASTRALISVLETFQNDKKGLGE 416
Query: 121 XPETXQK 101
PE +K
Sbjct: 417 LPEPLRK 423
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 199 bits (486), Expect = 1e-51
Identities = 99/187 (52%), Positives = 127/187 (67%), Gaps = 1/187 (0%)
Frame = -1
Query: 658 LSGTAEMSLAGLLANSVHNINDLPLKLAAVSRCYRAETSNLAEERGIYRVHQFNKVEMFV 479
LSGTAEM +A L N + LP++L ++SRC+R E S A E +YRVH+F+KVEMFV
Sbjct: 237 LSGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASEAKLYRVHEFSKVEMFV 296
Query: 478 VTTSEQSEEMLEVIRNTQEQIFTPLGISVRVLDMPPYELGAAAYRKYDMEAWMPGRQAYG 299
V+T EQS L+ + Q+ F LG+ R L+MP ELGA+A RK+D+EAWMPGR+ YG
Sbjct: 297 VSTPEQSAAELDYLVEVQKGTFQALGVHCRQLEMPSEELGASAARKFDIEAWMPGRKLYG 356
Query: 298 EISSCSNCTDYQSRRLNITYKTLNDEYCYVHTLNGTACAIPRMLIALIETHQH-PKGKIM 122
E+SS SNCTD+QSRRL I YKT + Y HT NGTA A R LI+++ET Q+ KG
Sbjct: 357 EVSSASNCTDFQSRRLGIKYKTADGTTKYAHTCNGTALASTRALISVLETFQNDKKGLGE 416
Query: 121 XPETXQK 101
PE +K
Sbjct: 417 LPEPLRK 423
>Z68882-1|CAA93105.1| 487|Caenorhabditis elegans Hypothetical
protein C47E12.1 protein.
Length = 487
Score = 142 bits (344), Expect = 2e-34
Identities = 81/195 (41%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Frame = -1
Query: 658 LSGTAEMSLAGLLANSVHNINDLPLKLAAVSRCYRAET-SNLAEERGIYRVHQFNKVEMF 482
L T+E +A N +LP+K A VS C+R E S+ + RGI+RVHQF K+E F
Sbjct: 268 LIATSEQPIAAYHRNEWIKETELPIKYAGVSTCFRQEVGSHGRDTRGIFRVHQFEKIEQF 327
Query: 481 VVTTSEQSEEML---EVIRNTQEQIFTPLGISVRVLDMPPYELGAAAYRKYDMEAWMPGR 311
V+ + +E E+I N E + L I +V+++ EL AA +K+D+EAW PG
Sbjct: 328 VLCSPNDNESWTLFDEMIGNA-ESYYQELQIPYQVVNIVSGELNNAAAKKFDLEAWFPGS 386
Query: 310 QAYGEISSCSNCTDYQSRRLNITY---KTLNDEYCYVHTLNGTACAIPRMLIALIETHQH 140
AY E+ SCSNC DYQSRRL + Y K L+ E +VH LN T CA R++ A++E +Q
Sbjct: 387 GAYRELVSCSNCLDYQSRRLKVRYGQTKKLSGEVPFVHMLNATMCATTRVICAILENNQT 446
Query: 139 PKGKIMXPETXQKFM 95
+G I P Q++M
Sbjct: 447 EEG-INVPTAIQQWM 460
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Frame = +2
Query: 350 SRCTQFIRRHI*NPYRYSQWCK------DLFLCVPYHFKHFFRLFRS 472
SR T+ + RH+ Y W D + C+P H +H RL+ S
Sbjct: 2810 SRQTEEVLRHVLESYNALSWLNLNRQTGDRYSCLPIHIQHLLRLYHS 2856
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Frame = +2
Query: 350 SRCTQFIRRHI*NPYRYSQWCK------DLFLCVPYHFKHFFRLFRS 472
SR T+ + RH+ Y W D + C+P H +H RL+ S
Sbjct: 2810 SRQTEEVLRHVLESYNALSWLNLNRQTGDRYSCLPIHIQHLLRLYHS 2856
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Frame = +2
Query: 350 SRCTQFIRRHI*NPYRYSQWCK------DLFLCVPYHFKHFFRLFRS 472
SR T+ + RH+ Y W D + C+P H +H RL+ S
Sbjct: 2810 SRQTEEVLRHVLESYNALSWLNLNRQTGDRYSCLPIHIQHLLRLYHS 2856
>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
protein Y47D3B.5b protein.
Length = 1136
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 628 GLLANSVHNINDLPLKLAAVSRCYRAETSNLAEERGIYRVHQFNKVEM 485
G A+ V+ I +PL LA +S+C + T +L+E+ +R+ K +M
Sbjct: 255 GRAASVVYAIVGIPLVLAILSKCGKWMTDSLSEKWQQHRIQITEKAKM 302
>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
protein Y47D3B.5a protein.
Length = 1088
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 628 GLLANSVHNINDLPLKLAAVSRCYRAETSNLAEERGIYRVHQFNKVEM 485
G A+ V+ I +PL LA +S+C + T +L+E+ +R+ K +M
Sbjct: 255 GRAASVVYAIVGIPLVLAILSKCGKWMTDSLSEKWQQHRIQITEKAKM 302
>U23171-1|AAC46702.2| 334|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 55 protein.
Length = 334
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 484 TFQLY*IDE-LCKSPFLQPS*KFQLCNTCLLQLV 582
TFQL + L KSP + + KF L NTC LQ++
Sbjct: 26 TFQLLLLTLILTKSPSILTNLKFFLINTCFLQII 59
>AF100306-5|AAC68924.2| 318|Caenorhabditis elegans Hypothetical
protein T24C4.5 protein.
Length = 318
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 325 WMPGRQAYGEISSCSNCTDYQSRRLNITYKTLNDEYCYVHTLNGT 191
W+ Q YG+ + T + ++I Y++ NDE+ +V L+ T
Sbjct: 28 WLCYGQNYGDYFNRREFTFILADDVHIRYRSYNDEHSFVKALSST 72
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 27.5 bits (58), Expect = 9.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 650 NCRNVSGWITCKQC 609
NCR + GW C++C
Sbjct: 1593 NCRTLEGWFNCEKC 1606
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 27.5 bits (58), Expect = 9.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 650 NCRNVSGWITCKQC 609
NCR + GW C++C
Sbjct: 1593 NCRTLEGWFNCEKC 1606
>U53332-4|ABS83852.1| 215|Caenorhabditis elegans Hypothetical
protein F59G1.8a protein.
Length = 215
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 319 PGRQAYGEISSCSNCTDYQSRRLNITYKTLNDEYCYV 209
P R+A + C N Q+R I DEYC V
Sbjct: 34 PPRKAEVNVDRCENLPSVQTRTERIDESRKEDEYCEV 70
>U53332-3|ABS83853.1| 218|Caenorhabditis elegans Hypothetical
protein F59G1.8b protein.
Length = 218
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 319 PGRQAYGEISSCSNCTDYQSRRLNITYKTLNDEYCYV 209
P R+A + C N Q+R I DEYC V
Sbjct: 34 PPRKAEVNVDRCENLPSVQTRTERIDESRKEDEYCEV 70
>AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical
protein Y67D2.6 protein.
Length = 732
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -1
Query: 571 VSRCYRAETSNLAEERGIYRVHQFNKVEMFVVTTSEQSEEMLEVIRNTQE--QIFTPLGI 398
+ RC A T + G+ VH+F+ + E+L + E Q+ +PLG+
Sbjct: 441 IQRCQMASTILQLKALGVQNVHRFHYLSPPPSWAMINGLELLYALGAIDETSQLTSPLGL 500
Query: 397 SVRVLDMPP 371
+ +PP
Sbjct: 501 QMAEFPLPP 509
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,458,512
Number of Sequences: 27780
Number of extensions: 323296
Number of successful extensions: 794
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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