Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B02
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7GVJ0 Cluster: Transcriptional antiterminator, BglG; n...    35   1.8  
UniRef50_A6DLX0 Cluster: Transcriptional regulator; n=1; Lentisp...    34   3.1  

>UniRef50_A7GVJ0 Cluster: Transcriptional antiterminator, BglG; n=1;
           Bacillus cereus subsp. cytotoxis NVH 391-98|Rep:
           Transcriptional antiterminator, BglG - Bacillus cereus
           subsp. cytotoxis NVH 391-98
          Length = 601

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 210 SFFKGFQKRRRLGIN-PALFIRLFTQNFFLG*PNXVFFYYYLKSNASLVPF-HQDLISSF 383
           +F     KR+ L I      IRLF   +F G  N  F Y ++++    + + HQ  IS  
Sbjct: 137 NFSLSLNKRKGLRITGDEKKIRLFALYYFFGFSNNAFSYEFMRAPKEQIDYVHQHFISQL 196

Query: 384 KLSLIMHIFTSTTLVIVSFYLK 449
            L+ +   FTS  ++ ++ YLK
Sbjct: 197 -LNEMKVTFTSNAVLHLAMYLK 217


>UniRef50_A6DLX0 Cluster: Transcriptional regulator; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Transcriptional
           regulator - Lentisphaera araneosa HTCC2155
          Length = 282

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +3

Query: 321 YYYLKSNASLVPFHQDLISSFKL--SLIMHIFTSTTLVIVSFYLKSV 455
           Y YL+ N SLV   +D+ ++FKL  + I H+F S T +  S +L ++
Sbjct: 181 YLYLEENYSLVNSREDVATNFKLTPNYISHLFKSQTGMSFSHHLTTI 227


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,679,037
Number of Sequences: 1657284
Number of extensions: 6182856
Number of successful extensions: 9592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9591
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)