Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_B02
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   3.8  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.6  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 596 CIGQRTSLKYERAVMHFDYLSINLRTHS 513
           CIGQR + K ER + H++   + + T S
Sbjct: 193 CIGQRRNAKEERILFHYNGHGVPMPTAS 220


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 611 VLVHDCIGQRTSLKYERAVMHFDYLSINLRTHS 513
           +L+H    Q   L+Y    MH D+   +LR HS
Sbjct: 17  ILLHQYFTQFFVLRYASPSMHLDWRFPSLRIHS 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,606
Number of Sequences: 5004
Number of extensions: 30091
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)