Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A22
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...   144   9e-36
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...   135   5e-33
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   1.6  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   8.4  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   8.4  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.4  
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    25   8.4  

>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 937

 Score =  144 bits (349), Expect = 9e-36
 Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
 Frame = -3

Query: 595  GAFRAVVCSHFTDGGAGAIELADAVIDAC-NRPTHFQYLYPLSFSIQDKIYTIASQMYGA 419
            GA  AV  +H+ +GG GA+ +A A+I+AC N  + F+ LY +   I+ KI  IA +MYGA
Sbjct: 780  GATDAVDSNHWAEGGKGALGVARALINACENVDSEFRLLYDVHEPIEKKIEIIAKEMYGA 839

Query: 418  SEIEYTEEVLEKIKIFTEKGYDKFPICMAKTSNSLTGDPAIKGAPTDFTLKINGIFVSVG 239
              IE +    E+++ FT++GY+  PIC+AKT  SL+ DP +KGAPT+FT+ I  + +S G
Sbjct: 840  DGIELSPLAKERLETFTKQGYNNLPICIAKTQYSLSHDPDLKGAPTNFTVPIRDMRLSAG 899

Query: 238  AGFVVPMVGEISKMPGLPTRPSIYDIDL 155
            AGF+ P+   IS +PGLPT+P+ Y+ID+
Sbjct: 900  AGFIYPLAAAISTIPGLPTKPAYYNIDI 927


>SPBC2G2.08 |ade9||C-1-
            tetrahydrofolatesynthase/methylenetetrahydrofolatedehydro
            genase/methylenetetrahydrofolatecyclohydrolase/formyltetr
            ahydrofolatesynthetase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 969

 Score =  135 bits (326), Expect = 5e-33
 Identities = 63/149 (42%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
 Frame = -3

Query: 595  GAFRAVVCSHFTDGGAGAIELADAVIDACNRPTH--FQYLYPLSFSIQDKIYTIASQMYG 422
            GA  AV   H+  GG GAIELA +V+ AC++ ++  F+ LY    SI+DK+  IA +MYG
Sbjct: 811  GAVDAVPSDHWAQGGKGAIELAKSVMTACDQSSNSKFRLLYDSETSIEDKVNVIAKEMYG 870

Query: 421  ASEIEYTEEVLEKIKIFTEKGYDKFPICMAKTSNSLTGDPAIKGAPTDFTLKINGIFVSV 242
            A+ +E++    E+I  F ++G+   PICMAKT  SL+ +P  +  P +FT+ I  + ++ 
Sbjct: 871  ANGVEFSSLAKERINTFIKQGFGNLPICMAKTQYSLSHNPEFRNVPKNFTVPIRDMRLNA 930

Query: 241  GAGFVVPMVGEISKMPGLPTRPSIYDIDL 155
            GAGF+ P+  EI  +PGLPT P+  +ID+
Sbjct: 931  GAGFIYPLAAEIQTIPGLPTAPAYLNIDI 959


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 529 DAVIDACNRPTHFQYLYPLSFSIQDKIYTIASQMY--GASEIEYTEEVLE 386
           D V+    R  H  +LY    SI   IY+IAS+ Y   +  +E  + VLE
Sbjct: 632 DLVLTLLCRWLHMVHLYSSRTSITSWIYSIASKFYFIDSLNLETKDSVLE 681


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = -2

Query: 503 THAFPVPIPPELLH---PGQDLHNRQSDVRR--FRNRIH*RGFRKN*NLHRKGIRQISDL 339
           TH F    PP LLH     +D+ N    + R  F N +    F  +  +    +R +S  
Sbjct: 176 THPFERRYPPSLLHQFPSSKDIKNETPTIDRCDFPNYVPMFAFPNDITIKESDVRPVSTY 235

Query: 338 H 336
           H
Sbjct: 236 H 236


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 433 QMYGASEIEYTEEVLEKIKIFTEKGYDKFPI 341
           Q +G  EIE+ +E  +     TEK   +FP+
Sbjct: 16  QKFGDREIEFVDEAQKSEVDETEKSIKRFPL 46


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 489 STYTP*ASPSRTRFTQSPVRCTALPKSNTLKRF*KKLKSSPK 364
           S+Y   A+P+R+ F+ + V   +LP S  L      L+SS K
Sbjct: 171 SSYYDLATPTRSSFSYNTVGAASLP-SGGLSNLSSSLRSSSK 211


>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 424 GASEIEYTEEVLEKIKIFTEKGYDKFP 344
           G  E+E   E LEK K   EK    FP
Sbjct: 88  GTPELEQANEYLEKAKEVIEKEQTNFP 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,991
Number of Sequences: 5004
Number of extensions: 50413
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)