Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A22
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.3  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   6.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 485 PIPPELLHPGQDLH 444
           P P  L+HPG+D++
Sbjct: 381 PAPQHLIHPGKDIN 394


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 485 PIPPELLHPGQDLH 444
           P P  L+HPG+D++
Sbjct: 381 PAPQHLIHPGKDIN 394


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 485 PIPPELLHPGQDLH 444
           P P  L+HPG+D++
Sbjct: 319 PAPQHLIHPGKDIN 332


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 433 QMYGASEIEYTEEVLEKIKIFTEKGYDKFPICMAKTSN 320
           + YG   +E T +  ++++     GY  +P C   T N
Sbjct: 190 EKYGQLFMEETLKAAKRMRPAANWGYYAYPYCYNLTPN 227


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 488 VPIPPELLHPGQDLHNRQS 432
           +P+  +L   G++LHN QS
Sbjct: 346 IPVVVDLPGVGENLHNHQS 364


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 170 LRH*PQHQXQGKSKAFSKC 114
           LRH P+       K F+KC
Sbjct: 81  LRHLPRSMQDSTKKLFNKC 99


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 116 CSRNSIILNLYIF 78
           CSRNS++ ++Y +
Sbjct: 46  CSRNSLMTHIYTY 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,196
Number of Sequences: 438
Number of extensions: 3910
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)