Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A21
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AF016432-3|AAK68168.1|  236|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    26   7.5  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    26   7.5  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    26   7.5  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    26   9.9  

>Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical
           protein F57B1.2 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -3

Query: 358 RPMFIRK---IGTRLRDSNTGASLQHECTGRPI 269
           +PM I +   +G  + +S  GAS+ H C+ RP+
Sbjct: 259 QPMHITRRALLGVNVANSLIGASIDHSCSSRPV 291


>AF016432-3|AAK68168.1|  236|Caenorhabditis elegans Hypothetical
           protein C07G3.10 protein.
          Length = 236

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 2   KLH-YK*SIYTQFRNLKIPSMALISFTTIKLIKISGD 109
           K+H Y  + YT+F NLK  + AL+     K + + GD
Sbjct: 112 KIHSYNETFYTKFNNLKPETQALLREWREKAVDLLGD 148


>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 284 AFVLKRCTGVRIPQAGTNFSNEHRPAE 364
           AFV+ R TGV  P     F  E RP E
Sbjct: 919 AFVIDRQTGVLTPSPHVVFDRETRPRE 945


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 284 AFVLKRCTGVRIPQAGTNFSNEHRPAE 364
           AFV+ R TGV  P     F  E RP E
Sbjct: 919 AFVIDRQTGVLTPSPHVVFDRETRPRE 945


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 318 SRRRVPIFLMNIGRP 362
           SRRRVP+FL ++ RP
Sbjct: 793 SRRRVPVFLPSVERP 807


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 318 SRRRVPIFLMNIGRP 362
           SRRRVP+FL ++ RP
Sbjct: 793 SRRRVPVFLPSVERP 807


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 284 AFVLKRCTGVRIPQAGTNFSNEHRPAE 364
           AFV+ R TGV  P     F  E RP E
Sbjct: 919 AFVIDRQTGVLTPSPHVVFDRETRPRE 945


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
           protein.
          Length = 2920

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 284 AFVLKRCTGVRIPQAGTNFSNEHRPAE 364
           AFV+ R TGV  P     F  E RP E
Sbjct: 919 AFVIDRQTGVLTPSPHVVFDRETRPRE 945


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 132 VYYVTELESPDILINFIVVKLISAI 58
           ++Y+ E  + D+L N++VVK+   +
Sbjct: 798 LFYIGEKHAADVLTNYLVVKIAGGL 822


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,054,257
Number of Sequences: 27780
Number of extensions: 145246
Number of successful extensions: 290
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)