Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_A20
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 87 2e-18
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 43 3e-05
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 0.59
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 28 1.4
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 27 1.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 2.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 2.4
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 27 3.1
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 4.1
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 87.4 bits (207), Expect = 2e-18
Identities = 38/100 (38%), Positives = 66/100 (66%)
Frame = -1
Query: 653 TXSAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTT 474
T A A + YGM+ VG +++ P + KP+SE TA++ID E+R L+ +A++ T
Sbjct: 643 TRMAQAYVTQYGMSPTVGTIAY--PIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTK 700
Query: 473 DLLTKHKPNIEKVAERLLKQEILSRDDMIELLGPRPFPEK 354
LL +HK +E +A+RLL++E+++ +++ +LGPRP+ K
Sbjct: 701 KLLLEHKQGLENIAQRLLQKEVITYNEVETILGPRPYAYK 740
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/88 (28%), Positives = 46/88 (52%)
Frame = -1
Query: 653 TXSAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTT 474
T A + +GM+ ++G VS E EM S T L++SE++ L+ +++ +
Sbjct: 613 TQVARRMVTEFGMSDRIGPVSLE----AEM---DNLSPATRALVESEIKSLLEASYERSL 665
Query: 473 DLLTKHKPNIEKVAERLLKQEILSRDDM 390
LL HK ++ +A L+ E L+ ++M
Sbjct: 666 SLLKSHKKELDALATALVDYEFLTAEEM 693
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 29.1 bits (62), Expect = 0.59
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 539 KTAELIDSEVRDL-INNAHKHTTDLLTKHKPNIEKVAERLL 420
+ AEL S+V L + N HK LLT PN+E+ LL
Sbjct: 756 RIAELSQSDVATLCLTNMHKILASLLTTDHPNLEESVMLLL 796
>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = -1
Query: 647 SAYAQIVHYGMNAKVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDL 468
S+ + ++H + N + + + D+PY + ++ S+ RD++ H + L
Sbjct: 52 SSNSFVIHKCLPPLQRNNTIRKRKRNPFLADRPYCINSEDMPLSDDRDMLKERHVKSRKL 111
Query: 467 LTKHKPN 447
L K K N
Sbjct: 112 LLKEKGN 118
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 299 ASCLHLMILCLQRTLHKY 352
ASCL LMILCL LH +
Sbjct: 379 ASCLALMILCLYYDLHMH 396
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -1
Query: 551 PYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIELLG 375
P SE ++L D+ VR+ I +HK + H+P I+ + + + D+ +E++G
Sbjct: 1599 PVSEWVSKL-DTHVRNCIKFSHKQNLEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIG 1656
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 470 LLTKHK---PNIEKVAERLLKQEILSRDDMIELLGPRPFPEK-STYEE 339
+L HK P E + RLLK E L +D +++ PRP + ST +E
Sbjct: 1054 VLVSHKISHPAYELLVSRLLKGEPLPKDVVVKEFKPRPSTKPFSTQDE 1101
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = -1
Query: 608 KVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAE 429
K +S+E Q V DK S ++ ++DL + + T +L +P E+V
Sbjct: 150 KTYKISYEQTQTLHAVFDKSLSHNNFQINSKILKDLTEHFGQRTEELTI--QPLQERVLL 207
Query: 428 RLLKQEILSRDDMIE 384
+E++ D+++
Sbjct: 208 TSFTEEVVHNRDILK 222
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 555 VNHHFTGLWHLERHISDFSVHTIVYNLR 638
V HH + LW+L+ +SD V +++Y+L+
Sbjct: 147 VAHHSSVLWYLQSELSD--VSSVLYHLQ 172
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 557 DKPYSEKTAELIDSEVRDLINNAHKHT 477
D + EL +EVR++ N+ HKHT
Sbjct: 1075 DVAQEDNFIELSSNEVRNVSNDEHKHT 1101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,849
Number of Sequences: 5004
Number of extensions: 45195
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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