Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A19
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    31   0.086
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    28   0.60 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.1  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   2.4  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   5.6  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    25   5.6  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   5.6  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    24   9.8  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    24   9.8  

>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 31.1 bits (67), Expect = 0.086
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
 Frame = -2

Query: 318 LRVVDNSEIGM----RAMAEGK----PPKVICVYNKQRVGFIGDRVMVAIKGQKKKGILV 163
           L+V+DNS   +    R +  GK      +V+ V  K R G          +G     I+V
Sbjct: 8   LKVIDNSGATLAECIRVVRAGKFASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIV 67

Query: 162 GLKQTQKV---KVPKFDSNNIVLIDDNGTPLGTRIHVPIPTILRT 37
             K   +    +  +FD N  VL++    PLGTRI   +   LRT
Sbjct: 68  RTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANELRT 112


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 229 CRFYW*QSNGSYQRAKEERHS 167
           C+ YW QSNG Y   K +RH+
Sbjct: 409 CKLYW-QSNGDYLCVKVDRHT 428


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 249 CVYNKQRVGFIGD 211
           CVY KQRV FIGD
Sbjct: 145 CVYLKQRVSFIGD 157


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 378 ELTCGFHTTACLNEVRLLTRLRVVDNS 298
           +L   FH+   LNE++L   L+V+ N+
Sbjct: 313 KLGSAFHSLTALNEIQLANHLQVIANA 339


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 339 EVRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQRV 226
           E  L   L++ D  E+    +A+G+ P  + V NKQ +
Sbjct: 85  ENNLQKPLKISDLQELVFWCLADGQAPSWVLVRNKQMI 122


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 169 NAFLLLPFDSYHYSVTNKTDTLFVVYTNYFR 261
           N  L + +  Y +  TN+T   F  Y +YFR
Sbjct: 9   NKLLTISYLLYRFPNTNQTKHCFQSYIDYFR 39


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 142 LLCLLETYKNAFLLLPFDSYHYSVTNKTDTLFVVYTNY 255
           LL  L ++KNA L LP     YS+T+       ++  Y
Sbjct: 603 LLLDLYSFKNALLKLPDLKQDYSITDSYINHLTIFMGY 640


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 74  VPRGVPLSSIKTMLLLSNFGTLTFCVCL 157
           V   VPL+ I  +L+L  +G   F +CL
Sbjct: 280 VKHKVPLTKIPWLLVLKMYGFRLFILCL 307


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = +2

Query: 128 FGTLTFCVCLRPTRMPF--FFCPLIATITLSPI 220
           F    + V L    MP   FFC ++   T SPI
Sbjct: 138 FTMYKYTVILTALEMPLAIFFCSIVCVCTFSPI 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,850
Number of Sequences: 5004
Number of extensions: 40291
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)