Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_A19
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 36 0.016
06_03_0418 + 20581420-20583207,20583243-20583254 31 0.60
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 31 0.60
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 31 0.60
10_06_0135 + 11108769-11108953,11109151-11109219,11109932-111100... 30 0.79
12_01_0465 + 3640736-3640817,3640898-3641088,3641266-3641789,364... 27 5.6
11_03_0148 + 10762150-10762264,10762347-10762776,10764653-107647... 27 7.3
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128... 27 7.3
10_06_0183 - 11562576-11562824,11563894-11564000,11564494-115645... 27 9.7
07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305 27 9.7
01_06_1683 - 39134826-39135664,39136202-39136278,39136391-391364... 27 9.7
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 35.9 bits (79), Expect = 0.016
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 15/114 (13%)
Frame = -2
Query: 336 VRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQ--RVGFIGDRVMVAIK-----GQKK 178
+++ T L+VVDNS G + +V+C+ + + + +GD ++ ++K G+ K
Sbjct: 52 IQMRTNLKVVDNS--GAK--------RVMCIQSLRGKKGARLGDTIIGSVKEAQPRGKVK 101
Query: 177 KG-ILVGLKQTQKVKVPK-------FDSNNIVLIDDNGTPLGTRIHVPIPTILR 40
KG ++ G+ +K + FD N IVL+++ G +GTR+ P+P LR
Sbjct: 102 KGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHELR 155
>06_03_0418 + 20581420-20583207,20583243-20583254
Length = 599
Score = 30.7 bits (66), Expect = 0.60
Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Frame = -2
Query: 369 CGFHTTA-CLNEVRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQRVGFIGDRVMVAI 193
CGF A C + L V NS G+ A A PP V+ N+ R + ++
Sbjct: 74 CGFFCGAPCDRKSFLFGVFLVSTNSTGGVAAAAAAPPPVVVWSANRDRPVRDNATLQLSD 133
Query: 192 KG----QKKKGILVGLKQTQK----VKVPKFDSNNIVLIDDNGTPLGTRIHVPIPTIL 43
G + G V T V DS N+VL DD+G+P+ P +L
Sbjct: 134 AGDLVLRDAVGAFVWSTNTSAGHAVTGVRLSDSGNLVLFDDSGSPVWQSFDHPADVLL 191
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 30.7 bits (66), Expect = 0.60
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 342 NEVRLLTRLRVVDNSEIGMRA-MAEGKPPKVICVYNKQRVGFIGDRVMVAIKGQKKKGIL 166
+ V+L TRLRV++ E+G A +GKP I VY K R G + A ++
Sbjct: 386 SRVKLETRLRVLEGKELGRSAGSTKGKPK--IEVYEKDRKKGAGALITPAKTYNPAADLV 443
Query: 165 VGLKQTQKVKVPK 127
+G + K P+
Sbjct: 444 LGQSTEETPKKPE 456
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 30.7 bits (66), Expect = 0.60
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 342 NEVRLLTRLRVVDNSEIGMRA-MAEGKPPKVICVYNKQRVGFIGDRVMVAIKGQKKKGIL 166
+ V+L TRLRV++ E+G A +GKP I VY K R G + A ++
Sbjct: 386 SRVKLETRLRVLEGKELGRSAGSTKGKPK--IEVYEKDRKKGAGALITPAKTYNPAADLV 443
Query: 165 VGLKQTQKVKVPK 127
+G + K P+
Sbjct: 444 LGQSTEETPKKPE 456
>10_06_0135 +
11108769-11108953,11109151-11109219,11109932-11110067,
11110632-11110879,11111329-11111555,11111665-11111780,
11111875-11112051,11112459-11112647,11112754-11112816,
11113239-11113358
Length = 509
Score = 30.3 bits (65), Expect = 0.79
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = -2
Query: 411 FKTILNKLNPVELTCGFHTTACLNEVRLLTRLRVVD-NSEIGMRAMAEGKPPKVICVYNK 235
FK+++ +NP ++ G + +N +TR RV+D + + +R E P + VYN
Sbjct: 124 FKSLVPMVNPNDIVFGGWDISSMNLADAMTRARVLDIDLQKQLRHHMESMVP-LPGVYNP 182
Query: 234 QRVGF-IGDRVMVAIKGQKKKGI 169
+ G R IKG KK+ +
Sbjct: 183 DFIAANQGSRANNVIKGTKKEQV 205
>12_01_0465 +
3640736-3640817,3640898-3641088,3641266-3641789,
3643726-3644029
Length = 366
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 88 SIVIY*NYVVAVELWYFDLLCLLETYKNAFLLLPFDSYHYSVTNKTD 228
S V Y YV+ YFD LE+Y N ++ DSY + +T+
Sbjct: 31 SYVSYDRYVLDTSEVYFDDCIPLESYLNIRPMVTSDSYQFRSFGETN 77
>11_03_0148 +
10762150-10762264,10762347-10762776,10764653-10764735,
10764980-10765068,10765178-10765251,10765333-10765383,
10765687-10765763,10766237-10767012
Length = 564
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 172 HSCRSQANT-KGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTNYPPNNFERE 23
+SCR + T KG+ +++ + + T T TN+P +N+E+E
Sbjct: 196 NSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPVSNYEKE 246
>03_05_0842 +
28110940-28111141,28111451-28111879,28112034-28112806,
28114046-28114237,28115116-28115277,28115395-28115861,
28116339-28116384,28116639-28116647
Length = 759
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 271 RKTSESNLCIQQTTCRFYW*QSNGSYQRAKEER--HSCRSQAN 149
+K + SN+ I + RFYW Q + EER HS AN
Sbjct: 513 KKRNTSNMKIDENWLRFYWQQMLKAVNTIHEERIVHSDLKPAN 555
>10_06_0183 -
11562576-11562824,11563894-11564000,11564494-11564572,
11564659-11564745,11570563-11570817,11570922-11571071,
11571163-11571798
Length = 520
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +2
Query: 341 FKQAVVWNPHVNSTGFNLFNIVLNIIWFRFSG 436
+K ++ + +NST LF+++++ ++F F+G
Sbjct: 477 YKYSLNFQTFINSTCVQLFSVIIHPLYFFFNG 508
>07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305
Length = 611
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 155 LRPTRMPFFFCPLIATITLS 214
L P R+ FFF PLIA + L+
Sbjct: 309 LHPVRVNFFFAPLIACLFLA 328
>01_06_1683 -
39134826-39135664,39136202-39136278,39136391-39136441,
39136581-39136654,39136782-39136870,39137152-39137234,
39138067-39138241,39138348-39138501
Length = 513
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 172 HSCRSQANT-KGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTNYPPNNFERE 23
+SCR + T KG+ +++ + + T TN+P NN+E+E
Sbjct: 124 NSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPVNNYEKE 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,360
Number of Sequences: 37544
Number of extensions: 233462
Number of successful extensions: 575
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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