Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_A19
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29536-3|AAA68795.2| 179|Caenorhabditis elegans Hypothetical pr... 78 4e-15
AL021566-1|CAA16501.1| 328|Caenorhabditis elegans Hypothetical ... 31 0.30
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.53
AL132948-43|CAB61061.2| 511|Caenorhabditis elegans Hypothetical... 30 0.70
U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 29 1.2
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 29 1.2
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 1.2
Z81117-3|CAB03318.1| 334|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81576-8|CAB76724.1| 440|Caenorhabditis elegans Hypothetical pr... 28 2.8
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 28 2.8
AL023837-4|CAB76749.1| 440|Caenorhabditis elegans Hypothetical ... 28 2.8
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 28 2.8
U97008-5|AAB52311.2| 338|Caenorhabditis elegans Serpentine rece... 28 3.7
U80024-2|AAK18892.1| 327|Caenorhabditis elegans Serpentine rece... 28 3.7
AL021503-5|CAA16416.2| 325|Caenorhabditis elegans Hypothetical ... 28 3.7
Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical pr... 27 4.9
AL023856-1|CAA19566.1| 327|Caenorhabditis elegans Hypothetical ... 27 4.9
Z80216-9|CAH10778.1| 403|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z80216-8|CAB02284.2| 261|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF016425-10|AAB65334.2| 336|Caenorhabditis elegans Serpentine r... 27 6.5
Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z74033-6|CAF31474.1| 321|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 27 8.6
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 27 8.6
AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical ... 27 8.6
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 27 8.6
AF047657-5|AAK18949.1| 335|Caenorhabditis elegans Serpentine re... 27 8.6
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 27 8.6
AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical ... 27 8.6
>U29536-3|AAA68795.2| 179|Caenorhabditis elegans Hypothetical
protein F45E12.5b protein.
Length = 179
Score = 77.8 bits (183), Expect = 4e-15
Identities = 47/103 (45%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Frame = -2
Query: 324 TRLRVVDNSEIGMRAMAEGKPPKVICVYNKQRVGF------IGDRVMVAIKGQKKKGILV 163
TRL VVDNS +G A GK P I VY + R +GD+++VAI+GQ +K +V
Sbjct: 57 TRLNVVDNSALGKEADTTGKLPYCIHVYKQGRRAKHMPHAELGDKILVAIRGQMRKAYVV 116
Query: 162 GLK---QTQKVKVPKFDSNNIVLIDDNGTPLGTRIHVPIPTIL 43
G +K VP D N IVL+D+ G PLG RI PIPT L
Sbjct: 117 GANTHVHYRKHGVPVTDQNMIVLLDEEGNPLGNRITAPIPTKL 159
>AL021566-1|CAA16501.1| 328|Caenorhabditis elegans Hypothetical
protein F08E10.1 protein.
Length = 328
Score = 31.5 bits (68), Expect = 0.30
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +2
Query: 65 CILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPT----RMPFFFCPLIATITLSPIKPTR 232
CI+ + S+K +L F +C+CL T +P+ P IA L PI+
Sbjct: 36 CIICKTPAHMKSVKWLL----FNLHCWCICLDITFSFLSIPYILLPAIAGYGLGPIESPG 91
Query: 233 CLLYTQITF 259
Y ITF
Sbjct: 92 LFFYLAITF 100
>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
F52B5.3 protein.
Length = 1425
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 172 HSCRSQANTKGQSTKVRQQ-QHSFNR*QWNTSRNQNTCTHTNYPPNNF 32
HS +Q +T+ +S K ++ H +R Q +N T T +N+P +NF
Sbjct: 1252 HSDPNQKSTERESRKPKEAVSHGNSRKQSKPPKNHQTKTTSNFPSHNF 1299
>AL132948-43|CAB61061.2| 511|Caenorhabditis elegans Hypothetical
protein Y39B6A.41 protein.
Length = 511
Score = 30.3 bits (65), Expect = 0.70
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 332 GYLQGF-VLLITLKSECEPWPKENLRK*FVYTTNNVSVLLVT 210
G LQGF V+LI +EC P K L F+ + + LLVT
Sbjct: 125 GMLQGFRVVLIIWIAECSPDSKRGLTSLFINSGGVIMTLLVT 166
>U97593-7|AAB52878.1| 591|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform b protein.
Length = 591
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 211 QSNGSYQRAKEER-HSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTN 50
Q +G Q E R +S + +N Q+ + +QQQH + N R N+ +TN
Sbjct: 17 QPSGGQQSYNETRQYSSNATSNYPSQTQQYQQQQHQYQSDHSNAQRLLNSGYNTN 71
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 211 QSNGSYQRAKEER-HSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTN 50
Q +G Q E R +S + +N Q+ + +QQQH + N R N+ +TN
Sbjct: 436 QPSGGQQSYNETRQYSSNATSNYPSQTQQYQQQQHQYQSDHSNAQRLLNSGYNTN 490
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 211 QSNGSYQRAKEER-HSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTN 50
Q +G Q E R +S + +N Q+ + +QQQH + N R N+ +TN
Sbjct: 601 QPSGGQQSYNETRQYSSNATSNYPSQTQQYQQQQHQYQSDHSNAQRLLNSGYNTN 655
>Z81117-3|CAB03318.1| 334|Caenorhabditis elegans Hypothetical
protein T06E6.9 protein.
Length = 334
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 44 RIVGMGTCILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATITL 211
+I+G+ CIL ++S+K +LL S+ +L F + + + F P++ T+ L
Sbjct: 25 QILGL-YCILFKTPQTMNSVKWVLLNSHIWSLIFDITVTALTITFLVFPVLGTVPL 79
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 28.7 bits (61), Expect = 2.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = -1
Query: 208 SNGSYQRAKEERHSCRSQ----ANTKGQSTK-VRQQQHSFNR*QWNTSRNQNTCTHTNYP 44
S+ +RA+ H RS+ ++ +G S+K RQQQH + + SR + + YP
Sbjct: 250 SSSRRRRARRRSHRSRSRTYSTSSDRGSSSKRSRQQQHMKRKTPSSPSRRSRSRSPPPYP 309
Query: 43 PNN 35
P +
Sbjct: 310 PGH 312
>Z81576-8|CAB76724.1| 440|Caenorhabditis elegans Hypothetical
protein Y37H2C.3 protein.
Length = 440
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 WYFDLLCLLETYKNAFLLL-PFDSYHYSVTNKTDTLFVVYTN 252
W F + L Y N L L P S Y+ N+TD++ +Y N
Sbjct: 161 WNFKTITLSAGYFNTILTLSPTHSMIYTFLNRTDSIVGLYEN 202
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 28.3 bits (60), Expect = 2.8
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -1
Query: 292 RNASHGRRKTS---ESNLCIQQTT--CRFYW*QSNGSYQRAKEERHSCRSQANTKGQSTK 128
RN H RR S +S +QQ + FY QSN YQ++ R S NT +
Sbjct: 12 RNDEHTRRNRSPSVDSVSRVQQQSGGFAFYNQQSNHQYQQSHPRRTSFSRDGNTGYYNNH 71
Query: 127 VRQQQHSFNR*QWNTSRNQNTCTHTNYPPN 38
++ ++N R+ N ++NY N
Sbjct: 72 SGNKRQTYN--NQRGGRSYNHRGNSNYQQN 99
>AL023837-4|CAB76749.1| 440|Caenorhabditis elegans Hypothetical
protein Y37H2C.3 protein.
Length = 440
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 WYFDLLCLLETYKNAFLLL-PFDSYHYSVTNKTDTLFVVYTN 252
W F + L Y N L L P S Y+ N+TD++ +Y N
Sbjct: 161 WNFKTITLSAGYFNTILTLSPTHSMIYTFLNRTDSIVGLYEN 202
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 2.8
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -1
Query: 292 RNASHGRRKTS---ESNLCIQQTT--CRFYW*QSNGSYQRAKEERHSCRSQANTKGQSTK 128
RN H RR S +S +QQ + FY QSN YQ++ R S NT +
Sbjct: 12 RNDEHTRRNRSPSVDSVSRVQQQSGGFAFYNQQSNHQYQQSHPRRTSFSRDGNTGYYNNH 71
Query: 127 VRQQQHSFNR*QWNTSRNQNTCTHTNYPPN 38
++ ++N R+ N ++NY N
Sbjct: 72 SGNKRQTYN--NQRGGRSYNHRGNSNYQQN 99
>U97008-5|AAB52311.2| 338|Caenorhabditis elegans Serpentine
receptor, class h protein231 protein.
Length = 338
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 65 CILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATITLSPIKPTRCLLY 244
CI+ + SIK +LL + + + + +P+ P IA L PI+ Y
Sbjct: 36 CIICKTPNHMRSIKWLLLNLHTWCILLDITISFLGIPYILYPAIAGYGLGPIESPGLFFY 95
Query: 245 TQITF 259
+TF
Sbjct: 96 LGVTF 100
>U80024-2|AAK18892.1| 327|Caenorhabditis elegans Serpentine
receptor, class h protein125 protein.
Length = 327
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 29 FKIVRRIVGMGTCILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATIT 208
F+I I+G CI+ + ++K +L+ +F T+ + + +PF P +A +
Sbjct: 29 FEIPFHIIG-AYCIIRKTPERMKNVKLNMLIKHFSTIFMSLSMSLFIIPFMMLPALAGVP 87
Query: 209 L 211
L
Sbjct: 88 L 88
>AL021503-5|CAA16416.2| 325|Caenorhabditis elegans Hypothetical
protein Y68A4A.9 protein.
Length = 325
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +2
Query: 65 CILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPT----RMPFFFCPLIATITLSPIKPTR 232
CI+ + S K +L F +C+CL T +P+ P IA L PI+
Sbjct: 36 CIVCKTPAHMKSDKWLL----FNLHCWCICLDITFSFLGIPYILLPAIAGYGLGPIESPG 91
Query: 233 CLLYTQITF 259
Y +TF
Sbjct: 92 LFFYLAVTF 100
>Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical
protein Y53C12B.5b protein.
Length = 276
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 124 ELWYFDLLC---LLETYKNAFLLLPFDS--YHYSVTNKTDTLFVVYTNYFRRFS 270
E W ++C LL N FL L +S + Y + T FV+++N+F FS
Sbjct: 144 EFWSIKIVCFPSLLNFPHNLFLSLVSNSMIFSYFLEFSLFTNFVIFSNFFIHFS 197
>Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical
protein F54C8.2 protein.
Length = 261
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 133 YFDLLCLLETYKNAFLLLPFDSYHYSVTNKTDTLFVVYTNYFRRFSFGHGSH 288
Y DL+ LL+ YKN + F+ + V +N + HG H
Sbjct: 45 YADLIALLDQYKNDLEAVGFNDLEQARRRAPSVDITVGSNSTNLVDYSHGRH 96
>AL023856-1|CAA19566.1| 327|Caenorhabditis elegans Hypothetical
protein Y94A7B.4 protein.
Length = 327
Score = 27.5 bits (58), Expect = 4.9
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 20 VFSFKIVRRIVGMGTCILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIA 199
+ F I + G G CIL + + S+K L +F + + L PF P +A
Sbjct: 17 ISGFSIPIHLFG-GYCILFKTPLVMKSVKWTLFNLHFWSAALDILLSLLAQPFLCSPFLA 75
Query: 200 TITLSPIK--PTRCLL 241
L +K PT L+
Sbjct: 76 GFPLGILKFAPTDVLV 91
>Z80216-9|CAH10778.1| 403|Caenorhabditis elegans Hypothetical
protein F10G8.9b protein.
Length = 403
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 288 MRAMAEGKPPKVICVYNKQRVGFI 217
MRA+A G P + ++K+R GF+
Sbjct: 196 MRALARGDQPNISRPFDKKRAGFV 219
>Z80216-8|CAB02284.2| 261|Caenorhabditis elegans Hypothetical
protein F10G8.9a protein.
Length = 261
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 288 MRAMAEGKPPKVICVYNKQRVGFI 217
MRA+A G P + ++K+R GF+
Sbjct: 54 MRALARGDQPNISRPFDKKRAGFV 77
>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
protein C08B11.3 protein.
Length = 1244
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 118 QQHSFNR*QWNTSRNQNTCTHTNYPPN 38
Q+ + NR Q++T +Q HTN PP+
Sbjct: 551 QRENLNREQYSTQSSQPHPPHTNVPPS 577
>AF016425-10|AAB65334.2| 336|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 13 protein.
Length = 336
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 83 GVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATITLS 214
GV L +++ L ++ T RP FF+C + + T+S
Sbjct: 145 GVLLGALQIALAIAYLTTRYIHAAFRPASFTFFYCQTLVSSTIS 188
>Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 169 NAFLLLPFDSYHYSVTNKTDTLFVVYTNYFRRFSFGHGS-HSDFRVINNTK 318
N F LL ++ +S+ + +F +++NY +++ G+G SD V + K
Sbjct: 6 NRFHLLVLLTWQFSIFFASQQIFPIFSNYVPQWTCGNGEPTSDCSVYESCK 56
>Z74033-6|CAF31474.1| 321|Caenorhabditis elegans Hypothetical
protein F38B7.8 protein.
Length = 321
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 88 SIVIY*NYVVAVELWYFDLLCLLETYKNAFLLL 186
S+++Y + E F+L+C+L ++ N ++LL
Sbjct: 33 SLILYIFFNEKTERTSFNLICVLRSFSNIYILL 65
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 193 QRAKEERHSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQ 71
+RA +++ ++QAN Q + + QQ S N+ RNQ
Sbjct: 243 RRAMQQQPMSQNQANQINQMNQNQNQQQSHNQNMTQNQRNQ 283
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 193 QRAKEERHSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQ 71
+RA +++ ++QAN Q + + QQ S N+ RNQ
Sbjct: 243 RRAMQQQPMSQNQANQINQMNQNQNQQQSHNQNMTQNQRNQ 283
>AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 169 NAFLLLPFDSYHYSVTNKTDTLFVVYTNYFRRFSFGHGS-HSDFRVINNTK 318
N F LL ++ +S+ + +F +++NY +++ G+G SD V + K
Sbjct: 6 NRFHLLVLLTWQFSIFFASQQIFPIFSNYVPQWTCGNGEPTSDCSVYESCK 56
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 193 QRAKEERHSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQ 71
+RA +++ ++QAN Q + + QQ S N+ RNQ
Sbjct: 243 RRAMQQQPMSQNQANQINQMNQNQNQQQSHNQNMTQNQRNQ 283
>AF047657-5|AAK18949.1| 335|Caenorhabditis elegans Serpentine
receptor, class h protein241 protein.
Length = 335
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +2
Query: 65 CILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATITLSPIKPTRCLLY 244
CIL + S+K ++L +F + + + +P+ P A L + + L+Y
Sbjct: 43 CILYKTPSRMKSVKLLMLNLHFWSCLSDLVISFVGLPYILLPAPAGYGLGLLDSPQILVY 102
Query: 245 TQITF 259
+TF
Sbjct: 103 LMVTF 107
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +2
Query: 65 CILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATITLSPIKPTRCLLY 244
CIL ++S+K +++ +F + + + +PF + P A L I ++Y
Sbjct: 37 CILFKTPERMTSVKWLMMNLHFWSTMSDLTICCFGIPFLYLPQNAGYGLGIIDAPGAMIY 96
Query: 245 TQITFGG 265
+ +TF G
Sbjct: 97 SGVTFIG 103
>AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical
protein D1065.1 protein.
Length = 585
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = -2
Query: 435 PENLNQIMFKTILNKLNPVELTCGFHTTACLNEVRLLTRLRVVDNSEIG 289
P ++++ + +L +P+ + FH++ACL E+ T LR ++ +G
Sbjct: 524 PAKVSEV-YTVMLTIASPIVVFYRFHSSACLAEIWKNTYLRNGHDANVG 571
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,913,567
Number of Sequences: 27780
Number of extensions: 225618
Number of successful extensions: 748
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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